Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00036 ATGGATTCTGGTGCTGCATTGGCATTTCCTGTGAACAATGGATACAGGGAAACTCATGATTTTGAGGAGGACTTTGTTGAGAAAGATCCTACCGGCCGGTATCTTCGGTATAATGAGATCTTGGGCAAGGGTGCTTTCAAGACTGTTTATAGGGGCTTTGATGAAATTGATGGAATAGAAGTTGCTTGGAACCAAGTCCGGATTGATGAACTCTTGCAGTCGGTAGATGATCTTGCAAAATTGTATTCTGAAGTTCATCTATTGAAGTCTCTGAAACATGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTGTTAACATTATTACTGAGCTATTCACATCTGGAAATTTAAGGCAATATCGTAAGAAGCATAGATATGTTGACATGAAAGCCATAAAAGGTTGGGCTAGACAAATTCTTCAAGGCTTAGTATATCTTCACAGTCACAAGCCACCTATTATTCACAGAGACTTGAAATGCGACAACATCTTTGTAAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGAACACCTGAGTTTATGGCTCCAGAACTATATGAAGAGGAATACAACGAACTTGTTGACGTCTATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTACCCATACAGTGAATGCAAAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATCGAACCTGCATCCCTTAAGAGGGTGAGTGATCCCCAAATTAAGGAGTTTATCAAGAAATGTCTTGTTCCAGCATCTGAAAGATTGTCTGCAAAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGTGTGCGAAGGATCCAATACTTGATCCCTTACAGTTACCTAGTAAATCTCTAAAAGCTATAAATCCGTCCAAGTCTGGTCATCTATCTATGGACCTAGATGCTGACTACAAACAGATCTCTATGAGTACTTATGCCCAAAGCAGCCAGGGAAGTCCACATTGTCTATCTCTTGAAGTTCAAAGGACGTATAAGAACAATGAGTTTAGGTTGAAAGGCATAAAAAATGATGATAACTCAATACCATTGATCTTGCGTATTGCTGATTTATGTGGTCGTGTAAGGAATATACATTTTCTCTTTTACCTTGAGACGGATACTGCAGTCTCTGTTGCCTCAGAGATGGTTGAAAATTTGGAGCTGGCAGATCATGATGTAGCCTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTACCTGGGTGGAAGCCATCATCTGATTATGCGTCAAGTGGAGGATTAAGTCCGTGTGGTGGTTCTCCAACACTTGGAGATGGCCAAACCTTAATGCCAAGTCCATGGGGTTCTGTCCTAACTAGTGTTCCCTCTGAATTAGCTTATGATCAAGATAACTTCTCTGCGCTTGATACTACTCAAAGAGAAGGTTTTGCAGGAGCTGAAGTGAGCTGCATGTTTAACATTGCTGATAATGATATTTTTGAGGGTGAGTATAGTTCTTCTCCTAGTTTGTCTAGCTTGGAAGATCAATATTCACAAGCATCTGCAGTTTCTGAGATAGTTGTTGAAGATGCTTGCATGAAAAATGACAACCGCCTTGATTTCGATGTTGATGTGAGCTATAAAGGACTGAGTTGGTCCGCCTCAGAACTGGAGCTTGGGGATGCATATTTTGAAGACTTTAAATTGCGGACTACAGACTGCAGTGCTGGAGAAGGCATTGTGATAAATGAATTCTCAAAGAACTCACATTCTACAGACCGAGACTTTTTTGGAACATCTAACGTTATCAGCTTGACAAGCAGTTGTTCTTCTCTATCATTAGCTGACAAAGATATTGATCTTGAACTTAAGCTTGAACTAGATGCAATTGAGTCACAGTATCGGCAATGGTTTCAAGAACTTTCTAGAATGAAGTTCGAGGCCTTGGAAGCTACCAGAAAGAGATGGACAGCCAAGAAGAAACTTGTTTTTCATTGA 2046 0.3988 MDSGAALAFPVNNGYRETHDFEEDFVEKDPTGRYLRYNEILGKGAFKTVYRGFDEIDGIEVAWNQVRIDELLQSVDDLAKLYSEVHLLKSLKHENIIKFFNSWIDDKKKTVNIITELFTSGNLRQYRKKHRYVDMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIYKKVTSGIEPASLKRVSDPQIKEFIKKCLVPASERLSAKELLKDPFLQVECAKDPILDPLQLPSKSLKAINPSKSGHLSMDLDADYKQISMSTYAQSSQGSPHCLSLEVQRTYKNNEFRLKGIKNDDNSIPLILRIADLCGRVRNIHFLFYLETDTAVSVASEMVENLELADHDVAFIAELIDYLIMKLLPGWKPSSDYASSGGLSPCGGSPTLGDGQTLMPSPWGSVLTSVPSELAYDQDNFSALDTTQREGFAGAEVSCMFNIADNDIFEGEYSSSPSLSSLEDQYSQASAVSEIVVEDACMKNDNRLDFDVDVSYKGLSWSASELELGDAYFEDFKLRTTDCSAGEGIVINEFSKNSHSTDRDFFGTSNVISLTSSCSSLSLADKDIDLELKLELDAIESQYRQWFQELSRMKFEALEATRKRWTAKKKLVFH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00036 681 Gene3D Phosphorylase Kinase; domain 1 18 116 - -
Gabi3020g00036 681 Gene3D - 373 440 - -
Gabi3020g00036 681 Pfam Protein kinase domain 38 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00036 681 Gene3D Transferase(Phosphotransferase) domain 1 118 298 - -
Gabi3020g00036 681 ProSiteProfiles Protein kinase domain profile. 35 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00036 681 SUPERFAMILY Protein kinase-like (PK-like) 36 344 IPR011009 -
Gabi3020g00036 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Gabi3020g00036 681 CDD STKc_WNK 33 292 - -
Gabi3020g00036 681 FunFam probable serine/threonine-protein kinase WNK9 118 297 - -
Gabi3020g00036 681 SMART serkin_6 35 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00036 681 FunFam Probable serine/threonine-protein kinase WNK1 20 116 - -
Gabi3020g00036 681 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 18 545 - -
Gabi3020g00036 681 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 389 431 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00036 Gabi-Chr3020 253425 258750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00036 620 677 MAP Kinase Kinase Kinase AT5G41990 41.379 1.96e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3020g00036 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00036 K08867 - qsa:O6P43_027404 930.628