Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00035 ATGGATACAGGGAAACTCATGATTTTGAGGAGGACTTTGTTGAGAAAGATCCTACCGGCCGGTATCTTCGGTTATAGGGGCTTTGATGAAATTGATGGAATAGAAGTTGCTTGGAACCAAGTCCGGATTGATGAACTCTTGCAGTCGGTAGATGATCTTGCAAAATTGTATTCTGAAGTTCATCTATTGAAGTCTCTGAAACATGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTGTTAACATTATTACTGAGCTATTCACATCTGGAAATTTAAGGCAATATCGTAAGAAGCATAGATATGTTGACATGAAAGCCATAAAAGGTTGGGCTAGACAAATTCTTCAAGGCTTAGTATATCTTCACAGTCACAAGCCACCTATTATTCACAGAGACTTGAAATGCGACAACATCTTTGTAAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGAACACCTGAGTTTATGGCTCCAGAACTATATGAAGAGGAATACAACGAACTTGTTGACGTCTATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTACCCATACAGTGAATGCAAAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATCGAACCTGCATCCCTTAAGAGGGTGAGTGATCCCCAAATTAAGGAGTTTATCAAGAAATGTCTTGTTCCAGCATCTGAAAGATTGTCTGCAAAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGTGTGCGAAGGATCCAATACTTGATCCCTTACAGTTACCTAGTAAATCTCTAAAAGCTATAAATCCGTCCAAGTCTGGTCATCTATCTATGGACCTAGATGCTGACTACAAACAGATCTCTATGAGTACTTATGCCCAAAGCAGCCAGGGAAGTCCACATTGTCTATCTCTTGAAGTTCAAAGGACGTATAAGAACAATGAGTTTAGGTTGAAAGGCATAAAAAATGATGATAACTCAATACCATTGATCTTGCGTATTGCTGATTTATGTGGTCGTGTAAGGAATATACATTTTCTCTTTTACCTTGAGACGGATACTGCAGTCTCTGTTGCCTCAGAGATGGTTGAAAATTTGGAGCTGGCAGATCATGATGTAGCCTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTACCTGGGTGGAAGCCATCATCTGATTATGCGTCAAGTGGAGGATTAAGTCCGTGTGGTGGTTCTCCAACACTTGGAGATGGCCAAACCTTAATGCCAAGTCCATGGGGTTCTGTCCTAACTAGTGTTCCCTCTGAATTAGCTTATGATCAAGATAACTTCTCTGCGCTTGATACTACTCAAAGAGAAGGTTTTGCAGGAGCTGAAGTGAGCTGCATGTTTAACATTGCTGATAATGATATTTTTGAGGGTGAGTATAGTTCTTCTCCTAGTTTGTCTAGCTTGGAAGATCAATATTCACAAGCATCTGCAGTTTCTGAGATAGTTGTTGAAGATGCTTGCATGAAAAATGACAACCGCCTTGATTTCGATGTTGATGTGAGCTATAAAGGACTGAGTTGGTCCGCCTCAGAACTGGAGCTTGGGGATGCATATTTTGAAGACTTTAAATTGCGGACTACAGACTGCAGTGCTGGAGAAGGCATTGTGATAAATGAATTCTCAAAGAACTCACATTCTACAGACCGAGACTTTTTTGGAACATCTAACGTTATCAGCTTGACAAGCAGTTGTTCTTCTCTATCATTAGCTGACAAAGATATTGATCTTGAACTTAAGCTTGAACTAGATGCAATTGAGTCACAGTATCGGCAATGGTTTCAAGAACTTTCTAGAATGAAGTTCGAGGCCTTGGAAGCTACCAGAAAGAGATGGACAGCCAAGAAGAAACTTGTTTTTCATTGA 1971 0.3973 MDTGKLMILRRTLLRKILPAGIFGYRGFDEIDGIEVAWNQVRIDELLQSVDDLAKLYSEVHLLKSLKHENIIKFFNSWIDDKKKTVNIITELFTSGNLRQYRKKHRYVDMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIYKKVTSGIEPASLKRVSDPQIKEFIKKCLVPASERLSAKELLKDPFLQVECAKDPILDPLQLPSKSLKAINPSKSGHLSMDLDADYKQISMSTYAQSSQGSPHCLSLEVQRTYKNNEFRLKGIKNDDNSIPLILRIADLCGRVRNIHFLFYLETDTAVSVASEMVENLELADHDVAFIAELIDYLIMKLLPGWKPSSDYASSGGLSPCGGSPTLGDGQTLMPSPWGSVLTSVPSELAYDQDNFSALDTTQREGFAGAEVSCMFNIADNDIFEGEYSSSPSLSSLEDQYSQASAVSEIVVEDACMKNDNRLDFDVDVSYKGLSWSASELELGDAYFEDFKLRTTDCSAGEGIVINEFSKNSHSTDRDFFGTSNVISLTSSCSSLSLADKDIDLELKLELDAIESQYRQWFQELSRMKFEALEATRKRWTAKKKLVFH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00035 656 Gene3D Phosphorylase Kinase; domain 1 14 91 - -
Gabi3020g00035 656 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 364 406 IPR024678 GO:0004674|GO:0005524
Gabi3020g00035 656 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Gabi3020g00035 656 SUPERFAMILY Protein kinase-like (PK-like) 25 319 IPR011009 -
Gabi3020g00035 656 ProSiteProfiles Protein kinase domain profile. 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00035 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Gabi3020g00035 656 Pfam Protein kinase domain 33 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00035 656 FunFam Probable serine/threonine-protein kinase WNK1 11 91 - -
Gabi3020g00035 656 FunFam probable serine/threonine-protein kinase WNK9 93 272 - -
Gabi3020g00035 656 CDD STKc_WNK 25 267 - -
Gabi3020g00035 656 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 520 - -
Gabi3020g00035 656 Gene3D - 348 415 - -
Gabi3020g00035 656 SMART serkin_6 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00035 Gabi-Chr3020 253425 258750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00035 595 652 MAP Kinase Kinase Kinase AT5G41990 41.379 1.74e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3020g00035 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00035 K08867 - qsa:O6P43_027404 865.529