Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00023 ATGTCTGTGAAAATGAAGTCCACCACAAGGAATTTCAGTGTTCTTCAGATCTTCTTTTGGCCATTGTTCTGTCTCTTTTTGGCAGGTTATGGTGCTGAAAGTAACTTGTATTGTTTACAAACCATCAAGAATTCGTTGGATCCATTTAATCATTTATCTAGCTGGGATTTCGAGAGCAACAATACTGTAGGTTACATGTGTAGTTTTACTGGTGTTGAATGCTGGAATTCTATGGAAGATAGTAGAATAATCAGTCTCTTGCTTTCTAATATGGGGCTAGAGGGCCAATTTCCTCGTTGCATAGAAAATTTCACATGGTTGCAGACTCTGAACCTTTCATACAACGAGCTTTCTGGATATATCCCATCTGATATATCAAGTAAACTGCCATATCTAACCTCACTTGATCTCTCAAATAACATTTTCAATGGTGAAATTCCAAAGGGTATTGCCAATTTCTCTTACTTAGATAACCTTAGACTTGATGGCAACCAGTTAACTGGTCAAATCCCACAAAAAATTGGGATGCTTCCCAGTATTAGAGTTTTCAGTGTTGCTAACAATTTGTTAACAGGGCCAGTGCCTGTTTTTGCTAGCAATGTTGATGTGAGTTTGAGCTATGTCAATAATAGTGGACTCTGTGGGGGAATACTTGGAAGCTGTGACGATAGATTAATTGATAGATCGTTTTGGTATAGTTTTATTATTGCTTTTGTTTCTTCAGCAATTTCTGTCATAGTAGCTTTCACACCTTGGACAGAATTCAAAAAGAGGAGGAGTAACGCTACATATCCCTTAAGAAAGAAGCAGAAGCAGCAGAAGGATACTAGACAAGTAGCTGAGTTGCTACCACAAGCTTTGCAAGAGCAAAGAATCAATGAGCTCTCAAGATTGTTGGAGAGATTGATTCCAAGAATGAGCTTCATGGAACTATGCAAAGCAACAGATTACTTTAACACAGACAATATGCTGGGGCTAGGAACAACAGGGATTATGTACAAAGCAAAAGTACCAAATAACTGTTTCCTTGCGGTTAAGAGACTATATGATGCTGATAAGTACAAGACGGAATTCTTGCTTGAAACAACGATTCCGGGGAGACACAGGCACAGAAACATAGCTCCACTGGTTGGATTCTGCATAGAAAAAAACGCAAGGATTCTTGTGTATAAGTACATGTTAAATGGAAGACTCCATGATTGGTTGCATCCTAATGAAGGACATAAAACTATGATATTGGGATGGCCTGAGAGGATTCACATTGCACTTGGTCTAGCAAGAGGTTTATGTTGGCTCCATGAAAAGTGCAAGATAGTCCATCTAAATCTCGGTTCAGAGTGTGTCTTGTTAGACAAGAATTTCGAGCCTAAAATTTCCAATTTTGGGAAGGCAAAATTTGTAAACCAGAAGTTTGAAGATCATGTGAGGATGAAATTGTTTATGATTGATGGACTTGGAGTGAAGGGTTCTGTTGAGAGGGATGTATATGACTTTGGAATAATCCTTTTTGAGCTTATAACAGGGAAAAGATTAAGTCCAGCTACTGATTCTTCTGACACTGTTGGTGGCTCTTTGATGAACTATATTAGCAATAAATTGTTCACTGATCCTATTGATTTTTATGATGCCGTTGACAAATCTATCATTGGGAAAGGTTTTGATCATAAAATCCTACGTCTCCTCGAAGTTGCATGTGACTGTGTTAAGCCTTCATTAGAGCAACGACCAAAGATGGTTGATAGGTACAAGACTATAAGAGCCCTGTGGGAGGGTTATAGACCCTGGTTTGATTCTGAAAGGCTGAAGCTATCTATGGTTTGTCCTGATAGTGATCAGATAACATATAGCAACGAAATAGAATGTATTTGTTGA 1872 0.3835 MSVKMKSTTRNFSVLQIFFWPLFCLFLAGYGAESNLYCLQTIKNSLDPFNHLSSWDFESNNTVGYMCSFTGVECWNSMEDSRIISLLLSNMGLEGQFPRCIENFTWLQTLNLSYNELSGYIPSDISSKLPYLTSLDLSNNIFNGEIPKGIANFSYLDNLRLDGNQLTGQIPQKIGMLPSIRVFSVANNLLTGPVPVFASNVDVSLSYVNNSGLCGGILGSCDDRLIDRSFWYSFIIAFVSSAISVIVAFTPWTEFKKRRSNATYPLRKKQKQQKDTRQVAELLPQALQEQRINELSRLLERLIPRMSFMELCKATDYFNTDNMLGLGTTGIMYKAKVPNNCFLAVKRLYDADKYKTEFLLETTIPGRHRHRNIAPLVGFCIEKNARILVYKYMLNGRLHDWLHPNEGHKTMILGWPERIHIALGLARGLCWLHEKCKIVHLNLGSECVLLDKNFEPKISNFGKAKFVNQKFEDHVRMKLFMIDGLGVKGSVERDVYDFGIILFELITGKRLSPATDSSDTVGGSLMNYISNKLFTDPIDFYDAVDKSIIGKGFDHKILRLLEVACDCVKPSLEQRPKMVDRYKTIRALWEGYRPWFDSERLKLSMVCPDSDQITYSNEIECIC 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00023 623 Gene3D Phosphorylase Kinase; domain 1 277 392 - -
Gabi3020g00023 623 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Gabi3020g00023 623 Gene3D Transferase(Phosphotransferase) domain 1 393 593 - -
Gabi3020g00023 623 Pfam Protein kinase domain 319 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00023 623 FunFam Nuclear pore complex protein NUP107 32 196 - -
Gabi3020g00023 623 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 85 580 - -
Gabi3020g00023 623 SUPERFAMILY L domain-like 36 225 - -
Gabi3020g00023 623 ProSiteProfiles Protein kinase domain profile. 318 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3020g00023 623 SUPERFAMILY Protein kinase-like (PK-like) 300 580 IPR011009 -
Gabi3020g00023 623 Gene3D Ribonuclease Inhibitor 34 221 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00023 Gabi-Chr3020 182670 185039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00023 33 590 Receptor kinase-like Gene Family AT3G28450 35.652 2.09e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Gabi3020g00023 Pkinase 6.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00023 - - gmx:106795644 926.391