Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00022 ATGGAGTATGAAGATGAAGATTGGCTGTGTGTTTCTCTGGAAGACTTTTCTCTTGCTACTGAAAATGGTAGTAACAAGGGAAGGATGAGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTACAAATCCAAGAACCTTGAAACTGAAAGGAGGAGGAGGGAAAAACTCAGTAGCAAGCTCTTGATGTTGCGGTCTTTAGTACCTATCATCACAAATATGAACAAAGCCACCATTATTGAAGATGCTATCACCTACATCAAGAAGCTGCAAGATGAAGTGCAGAGTCTCCGCCAAGAGCTTCTCCAAATGGAAGCAACTTCAGAGGAAACAAGCGAGACAAGGATTGATGAAACTAATGCTGCAGAGGCAGAGGTTAAGGTGACACAAATCGATGGGAATAAAAGATCATCATTGAGAAGAAGAGGGGAAGGTTCAAGAAACTGA 447 0.4183 MEYEDEDWLCVSLEDFSLATENGSNKGRMSRKRNYDDDTREYKSKNLETERRRREKLSSKLLMLRSLVPIITNMNKATIIEDAITYIKKLQDEVQSLRQELLQMEATSEETSETRIDETNAAEAEVKVTQIDGNKRSSLRRRGEGSRN 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00022 148 Coils Coil 146 148 - -
Gabi3020g00022 148 MobiDBLite consensus disorder prediction 134 148 - -
Gabi3020g00022 148 Coils Coil 80 114 - -
Gabi3020g00022 148 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 134 - -
Gabi3020g00022 148 MobiDBLite consensus disorder prediction 22 51 - -
Gabi3020g00022 148 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Gabi3020g00022 148 Pfam Helix-loop-helix DNA-binding domain 44 91 IPR011598 GO:0046983
Gabi3020g00022 148 Gene3D - 32 107 IPR036638 GO:0046983
Gabi3020g00022 148 SMART finulus 47 96 IPR011598 GO:0046983
Gabi3020g00022 148 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 107 IPR036638 GO:0046983
Gabi3020g00022 148 MobiDBLite consensus disorder prediction 26 51 - -
Gabi3020g00022 148 MobiDBLite consensus disorder prediction 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00022 Gabi-Chr3020 180269 180960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00022 28 125 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 48.515 4.19e-24 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3020g00022 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00022 - - vun:114186874 193.741