Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00012 ATGGTTCAACCATTGATTCAAGAAGTTCGAAGTCAATCAGTTTTATTGTCCAATAAGTATGACTCAATTGTTAAAAGAATCATTTATGATAATAATCCAGTCTATGATAAATCTGATGGAGAATTTGATGACGAAGATGTAATAGATGGAGAGTTATCAATTGAGTGTTTACCTAAAGAGATTGATATCAATGAAGATGAAGAAGATTCAAGGACGAATCTTTTCCTAACAGGGGAGAATGATGCACTTATAGTTGACCTCCAACCATTGATTCAAGAAGCTCGTAGTCAACTAGAATTGTGGCCCAATAAGTATGATCCAATTTTTAGAAGAAAAATGGAGTATGAAGATGAAGATTGGCTATGTGTTTCTCTGGATGACTTTTCTCTTGCTACTGAAAATGGTAGTAGCAAGGGAAGGATGAGTAGGAAGAGGAACTATGATGATGAAACAAGAGAGTACAAATCCAAGAACCTTGAAACTGAGAGGAGGAGGAGGGAAAAACTCAGTAGCAGGCTCTTGATGTTGCGGTCTTTAGTACCTATCATCACAAATATGAACAAAGCAACCATTGTTGAAGATGCTATCACCTACGTCAAGAAGCTTCAAGATAAAGTGCAGAGTCTCAGCCAAGAGCTTCTCCAATTGGAAGCAACTTCAGAGGAAACTGGGGAGACAAGGATTGATGAAACTGATGCTGCAGAGGATATGAAGAATTGGGGGATACAGGAAGAGGTTAGGGTGGCACAAATTGATGGGAATAAACTCTGGGTCAAGATCATCATTGAGAAGAAGCGGGGAAGGTTCAAGAGACTTATGGAGGCCATGAATAATTTCGGCATTGAGCTCGTGGACATCAATCTTACAACCGTAAAAGGAGCATTTCTGATTACAATCTGCATACAGGAGCTGAAAGGCAAGGATGATGAAAGACTTGCAGTTCATCAAATCAAGAATTTGTTGGAATATATTATCAGTAGCACATAG 987 0.387 MVQPLIQEVRSQSVLLSNKYDSIVKRIIYDNNPVYDKSDGEFDDEDVIDGELSIECLPKEIDINEDEEDSRTNLFLTGENDALIVDLQPLIQEARSQLELWPNKYDPIFRRKMEYEDEDWLCVSLDDFSLATENGSSKGRMSRKRNYDDETREYKSKNLETERRRREKLSSRLLMLRSLVPIITNMNKATIVEDAITYVKKLQDKVQSLSQELLQLEATSEETGETRIDETDAAEDMKNWGIQEEVRVAQIDGNKLWVKIIIEKKRGRFKRLMEAMNNFGIELVDINLTTVKGAFLITICIQELKGKDDERLAVHQIKNLLEYIISST 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00012 328 MobiDBLite consensus disorder prediction 138 163 - -
Gabi3020g00012 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 219 IPR036638 GO:0046983
Gabi3020g00012 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Gabi3020g00012 328 Coils Coil 192 219 - -
Gabi3020g00012 328 Gene3D - 145 219 IPR036638 GO:0046983
Gabi3020g00012 328 SMART finulus 159 208 IPR011598 GO:0046983
Gabi3020g00012 328 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 126 323 - -
Gabi3020g00012 328 MobiDBLite consensus disorder prediction 134 163 - -
Gabi3020g00012 328 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00012 Gabi-Chr3020 125378 131588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00012 140 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 43.719 1.49e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3020g00012 HLH 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00012 - - vun:114186874 291.967