Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3020g00002 ATGGAGTATGAAGATGAAGATTGGCTATGTGTCTCTCTGGAAGACTTTTCTCTTGCTACTGAAAATGGTAGTAGCAAGGGAAGGGTGAGTAGGAAGAGGAACTATGATGATGACACAAGAGAGTACAAATCCAAGAACCTTGAAACTGAAAGGAGGAGGAGGGAAAAACTCAGTAGCAGGCTCTTGATGTTGCGGTCTTTAGTACCTATCATCACAAATATGAACAAAGCAACCATTGTTGAAGATGCTATCACCTACATCATGAAGCTGCAAGATAAAGTGCAGAGTCTCAGCCAAGAGCTTCTCCAATTGGAAGCAACTTCAGAGGAAACAGGGGAGACAAGGATTGATGAAACTGATGCTGCAGAGGATATGAAGAATTGGGGGATACAGGCAGAGGTTAAGGTGGCACAAATCGACGTGAATAAACTCTGGGTCAAGATCATCATTGAGAAGAAGAGGGGAAGGTTCAAGAAACTGATGGAGGCCATGAATGATTTTGGCATTGAGCTCATAGACACCAATCTTACAACAGCAAAAGGAGCATTTGTGATTACAAGCTGCATGCAGGGCAAGGATGGTGAAAGACTTGCAGTTCATCAAATCAAGAATGTGTTGGAAGATATTATCAGTGGCATATAG 642 0.4252 MEYEDEDWLCVSLEDFSLATENGSSKGRVSRKRNYDDDTREYKSKNLETERRRREKLSSRLLMLRSLVPIITNMNKATIVEDAITYIMKLQDKVQSLSQELLQLEATSEETGETRIDETDAAEDMKNWGIQAEVKVAQIDVNKLWVKIIIEKKRGRFKKLMEAMNDFGIELIDTNLTTAKGAFVITSCMQGKDGERLAVHQIKNVLEDIISGI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3020g00002 213 Pfam Helix-loop-helix DNA-binding domain 44 91 IPR011598 GO:0046983
Gabi3020g00002 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Gabi3020g00002 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 107 IPR036638 GO:0046983
Gabi3020g00002 213 Coils Coil 80 107 - -
Gabi3020g00002 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 27 207 - -
Gabi3020g00002 213 Gene3D - 32 107 IPR036638 GO:0046983
Gabi3020g00002 213 SMART finulus 47 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3020g00002 Gabi-Chr3020 32628 33726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3020g00002 28 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 43.299 9.42e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3020g00002 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3020g00002 - - vum:124819567 296.975