Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3011g00027 ATGGGGGATCTGGAGAGAATGGGCAGAGAACTCAAATGTCCCATTTGTTTGAGTTTGATCGATTCTGCAGTTTCACTTACCTGCAATCATATTTTCTGCAACTCATGTATTTTCAAGTCCATGAAGTCTGCTTCTGCATGTCCTGTCTGTAAAGTACCCTTCACTCGTAGAGAGGTTCGTCCTGCTCCTCACATGGACAACTTGGTCAGCATCTACAAAAGCATGGAAGTTGCTTCGGGAATTAGTATGTTTGTCACTCAGAATGATCCTGCTACCAAGTTATCAGATGGAGAAAAACAATGTGAAGGTGATGCTGACTCTGGTAAGAAAGAAGCTGGTGGAACTCATAAAAATCATGTACAGGAGAAAAAAAGTTTAAAGAGAAAGAAGTCAAGGAAGAAGATTAATACCAGCATGAAAAACTCCGGTTCTGATTTTGCAAAACCTTCTTTTCCAGCAAAGAAAAGGGTTCAGGTGCCACAAAATCTTCTTTCAGAAACTCCATTAAAAAATTTGAAGTTTGGAAACTCTCCTAGCGCAATTATCAAAGAGGGAACAGAAAAGGTTTCAGTCATGGCAAATGAAAGTAATAAAGATGATCATATTCGTTCGCCTTTCTTTTGGTTAAGAGAGGAGGAAGATGGTGAAAAGTTAAGTCAGCACATTAATGAGGATCAACTTATTGATGGCTCAACACCAATCCCTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAAACCCTTCGAAAGCAGCTCCTTCAGATGAGGTGCAAAATAAAGCCTCTGCTGATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCCTTCAGAATGCAGGTTGTAGATGCTGGTGAGATTGATGAAAATCATGAGGAATTGGTAGCAGACTCACAGGAGCTGAAAACAAATCAGTCAAGTGCTTTTGCCGACAAAGGAAAAACTGAGAATCCTAAAGAAGGAAATAGATTGGCCGATGTGTTTCCACCGAGTGTGTTCTCTCCACAAATTATAAGTTATGATGATCTAAATGGAATACAAAAGTCTACAAAGAGAAGGAGGAAGGCTAGTGAAAAAGCTAGGCAAGAGCAGATTGTGGAACAAAATGATCCAATTGATGGAATGAATGTTGATTTAAATATCTCATTAAGAGGCAATCAGGAGCAAGCACGGGATTATAAGCACAAATCTTCTAATCTGGGGAAGACTAATAGAAGGGGCAAGAGGGTTTGTTTCAATACCAGTAAAAATCTAACACCTCAAACTGCTTGTACAGTCTCCAATGTATTAGGAGTTCTGAGCAATGATGAAGTGAATATGGCTAAGAATTCACATACTTCACCATGTAAACAAGAAAGTGGAAAGCATTGTCCTCAGGACATTGCTGGAAAAAGTCAGATAAATAGATCTGGAAAACAAAAGCTGGATTATGTGCAGGATGTAGCTAAAGATTTATCTTCAATGCAAGACCAAGCTAATGAGTTTGCTGGTTCTACTTCATCCTTTTTGAGTCTGCAGGCGAATAATGATGTAAAGGCCTCCAATAGCAGGCAAAGCAAAAACAATTTTTCCAGAAAATCTATATCTTGCAGCAGAGAATTGAGGAGTACTAAAATGCTGAAACTTTCTTCTGATTGTATCTCTACTACTAAAAATAGTGATGGAGTCCAACCTAATGAAAGTCGTCAGCGAGGTCCTGATGTCAGAGCATTGAATAATCCATCAAAAGAGAAACATTGTCCATTGGTGGATGAACCTGTTTTAAGGAAATGTGAGAGCCATGTCAAAATGTATCAATGTGCTTTCTGTCTGTCATCAGAAGAATCAAAGGTTTCTGGACCGATGGTGCATTACTTTGAAGGGAAACCTGTAATTGCAGATTATGAAGGAGGATCTAAAGTCACACATTGTCACAGGAACTGCACGGAATGGGCGCCCAATGTATATTTTGAAGATGATAATGCAATTAATCTTGAAGCTGAAATAAACAGAAGTAGGAGAATCAAATGTAGCTTTTGTGGACTTAAAGGGGCTGCACTCGGTTGTTATGATAAAAGCTGTCGCAGGAGCTTTCATGTTCCTTGCGCCAAGTTGACTTCTCAATGTCGATGGGATATGGAAAACTTCGTCATGTTATGCCCTATACATGCTTCCTCCATCTTGCCCTGTGAAAGTTCAGTATCCCAAGAAAGGAGCAAGAAATGCACAGTTAGAGAGGTTAAAAGCGGTGGTCGGAAACATGAGACTACAAGCCAAAATCGAACTGTTGATGGATCATACAAGAAAATTGTACTATGTTGTTCAGCTCTATCCGTACAGGAGAGGGATGTTGTTTCAGAATTTAAAAGAGTATCCAAGGTTACAGTTCTGAAAAATTGGGATTCAAGCGTAACCCATGTTATAGCATCAATAGATGAAAATGGCGCATGCAGAAGAACCCTGAAAGTATTGCTGGGCATCCTGGAGGGGAAGTGGATTCTCAATATTGAGTGGATCAGAGCTTGCTTGAAAGAAACGAAACCTGTTGATGAGGAGCATTATGAAATAAATGTTGACATTCATGGAATCAGGGACGGTCCTCGCGTTGGACGACTAAGAGCATTGAACAAGCAACCGAAGCTTTTTGATGGTTACAAGTTCTATTTTATGGGGGATTTTAAACCATCATATAAGAGCTATCTGCAAGACCTTGTGATTGCTGCTGGAGGGATAATTCTGCATAGAAAACCAGTGTCTGGTGACCCAGAAGCAATGTCGCCTGATATGCATCCATACCAAACACTCATAATTTACAGCCTTGAGCTTCCTGATAAATGCAATCCTTTAAAAACAGATACGATTTTCAGCCAAAGGCAACGTGATGCGGAGGTTCTGGCAAGTTCTACCGGTTCAAAGGTTGCAAGTAATACATGGATTCTGAATTCAATTGCAGCCTGCAAGCTGCAAAGCCATCCTCAATAA 2994 0.3998 MGDLERMGRELKCPICLSLIDSAVSLTCNHIFCNSCIFKSMKSASACPVCKVPFTRREVRPAPHMDNLVSIYKSMEVASGISMFVTQNDPATKLSDGEKQCEGDADSGKKEAGGTHKNHVQEKKSLKRKKSRKKINTSMKNSGSDFAKPSFPAKKRVQVPQNLLSETPLKNLKFGNSPSAIIKEGTEKVSVMANESNKDDHIRSPFFWLREEEDGEKLSQHINEDQLIDGSTPIPPSFSDLKDSDDENPSKAAPSDEVQNKASADLFDSEMFEWTQRPCSPELFSSPFRMQVVDAGEIDENHEELVADSQELKTNQSSAFADKGKTENPKEGNRLADVFPPSVFSPQIISYDDLNGIQKSTKRRRKASEKARQEQIVEQNDPIDGMNVDLNISLRGNQEQARDYKHKSSNLGKTNRRGKRVCFNTSKNLTPQTACTVSNVLGVLSNDEVNMAKNSHTSPCKQESGKHCPQDIAGKSQINRSGKQKLDYVQDVAKDLSSMQDQANEFAGSTSSFLSLQANNDVKASNSRQSKNNFSRKSISCSRELRSTKMLKLSSDCISTTKNSDGVQPNESRQRGPDVRALNNPSKEKHCPLVDEPVLRKCESHVKMYQCAFCLSSEESKVSGPMVHYFEGKPVIADYEGGSKVTHCHRNCTEWAPNVYFEDDNAINLEAEINRSRRIKCSFCGLKGAALGCYDKSCRRSFHVPCAKLTSQCRWDMENFVMLCPIHASSILPCESSVSQERSKKCTVREVKSGGRKHETTSQNRTVDGSYKKIVLCCSALSVQERDVVSEFKRVSKVTVLKNWDSSVTHVIASIDENGACRRTLKVLLGILEGKWILNIEWIRACLKETKPVDEEHYEINVDIHGIRDGPRVGRLRALNKQPKLFDGYKFYFMGDFKPSYKSYLQDLVIAAGGIILHRKPVSGDPEAMSPDMHPYQTLIIYSLELPDKCNPLKTDTIFSQRQRDAEVLASSTGSKVASNTWILNSIAACKLQSHPQ 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3011g00027 997 ProSiteProfiles BRCT domain profile. 881 997 IPR001357 -
Gabi3011g00027 997 Gene3D BRCT domain 882 990 IPR036420 -
Gabi3011g00027 997 SMART BRCT_7 767 850 IPR001357 -
Gabi3011g00027 997 SMART BRCT_7 883 990 IPR001357 -
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 453 482 - -
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 314 339 - -
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 559 585 - -
Gabi3011g00027 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 730 IPR013083 -
Gabi3011g00027 997 SUPERFAMILY BRCT domain 885 995 IPR036420 -
Gabi3011g00027 997 CDD ePHD 611 727 - -
Gabi3011g00027 997 SMART PHD_3 680 728 IPR001965 -
Gabi3011g00027 997 Gene3D BRCT domain 770 876 IPR036420 -
Gabi3011g00027 997 FunFam Breast cancer associated RING 1 1 83 - -
Gabi3011g00027 997 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 227 260 - -
Gabi3011g00027 997 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Gabi3011g00027 997 ProSiteProfiles BRCT domain profile. 799 860 IPR001357 -
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 95 120 - -
Gabi3011g00027 997 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 994 IPR031099 GO:0006281|GO:0006974
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 91 153 - -
Gabi3011g00027 997 SMART ring_2 13 50 IPR001841 -
Gabi3011g00027 997 SMART ring_2 681 727 IPR001841 -
Gabi3011g00027 997 CDD BRCT_Bard1_rpt1 774 853 - -
Gabi3011g00027 997 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Gabi3011g00027 997 Pfam BRCA1 C Terminus (BRCT) domain 799 847 IPR001357 -
Gabi3011g00027 997 FunFam Breast cancer type 1 susceptibility protein homolog 771 877 - -
Gabi3011g00027 997 SUPERFAMILY RING/U-box 4 74 - -
Gabi3011g00027 997 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Gabi3011g00027 997 FunFam Breast cancer associated RING 1 605 730 - -
Gabi3011g00027 997 ProSiteProfiles Extended PHD (ePHD) domain profile. 608 728 IPR034732 -
Gabi3011g00027 997 Pfam PHD-like zinc-binding domain 649 727 - -
Gabi3011g00027 997 SUPERFAMILY BRCT domain 774 876 IPR036420 -
Gabi3011g00027 997 MobiDBLite consensus disorder prediction 121 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3011g00027 Gabi-Chr3011 239538 251900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3011g00027 8 63 RAD5 or RAD16-like Gene Family AT5G05130 35.088 1.74e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3011g00027 K10683 - gmx:100804958 1435.24