Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3011g00012 ATGAGACTTTCTTCGGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAAGCGAGTTCTAGATCCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTGTCTTTGCCTGCGGTTGGAAGCCGCGTGGTTTACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCAACCAACAAGGAAGTGGATGCTCATATTCCAAACTATCCGAGCTTACCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATACTGAGACTGATGAAGTGTACGCACAAATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAATAAACAGCCAACAAACTATTTCTGCAAAACTTTAACTGCCAGTGACACTAGCACTCATGGGGGATTCTCTGTGCCTCGACGGGCAGCTGAAAAAGTGTTTCCTTCATTGGATTTCTCCCAACAGCCTCCTGCTCAAGAGTTAGTTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAACCCAAAAGGCATCTACTTACCACGGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGTTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTTGGCATCCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCGTCGGTGTTGTCAAGTGACAGTATGCACTTGGGGCTTCTTGCTGCCGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGATATGCGTTTCAGGATGCTGTTTGAAACAGAGGAATCAAGTGTGCGGCGATACATGGGTACGATAATTGGAATTAGTGACCTGGATCCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACGGCAGGAGAGAGACAGCCTAGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACATTTCCTATGTATCCATCACCATTCCCCCTCAGGCTCAAACGACCGTGGCCTCCAGGACTGCCTTCATTTCATGGCATGAAGGATGACGATTTTGGCATAAATTCACCCCTGTTATGGCTCCGAGACACTGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGGGTTAGTCCTTGGATGCAGCCAAGGTTTGATTCTTCCGTGCTGAATATGCAAACAGATATGTATCAAGCTATGGCTGCTGCTGCACTTCAGGACATGAGGAGTGTAGATCCTTCGAAACAGCATCCTGCTTCCTTGCTTCAATTTCAGCAACCACAGAACTTCCCAAACAGGAGTGCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCACAACCTCAGCAGGTTTTTCAAAATAATCAAGAGAGTCAGCATCCATTGCAATCTCAGCCACAAACTCAGACTCATCTTCAGCCGCATCTACAGCATCAGCACTCAATCAATAGTCAGCATAATTATCACAACCAGCAGCAGCAACAACAACAAACTCAACTGCAACAGCAAGTGGTAGATAATCAACAGCAGATTACGAGTGTAGTCTCTACAATGTCTCAATTTGTTTCAGCACCTCAACCTCAATCACCACCTATGCAAGCTATCGCTTCACTGTGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACCCTGTGACTACTAATGTTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTCTGAACCTTCCTAGAACAAATTCTTGGGTTCCTGTTCAAAATTCAAGTGCATGGTCCTCCAAGCGTGTTGCACTTGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGTCTCAGGTGGAGCAGTTAGGGCAGCCACAAAATACCATGTCTCAAAATGCTGTTACATTGCCACCATTTCCTGGTAGAGAGTGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTTTTATTTGGTGTTAATATAGAGCCCTCATCTCTTCTAGTGCATAATGGGATGTCAAGCCTCAAGGGGGTTAGCAGCAACAGTTGCCCTTCAACCATGCCCTATCAATCTTCTAATTACCTGAATACCACATGCACTGATTCTTCATTGAATCATGGAATAACACACAGCATTAGCGATTCCGGCATCCTGCAGGCACCAGAAAATGCAGGGCATGGAAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTTGGAAGATCATTGGATATTACTAAATTCAGCAGCTACCACGAGCTGCGCAGTGAGCTCGCCCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCGCCTCAGGAAGTGCAGCAAATGGGAAACTCCGGCCTGGAGCTTTTGAACTCGGTTCCGATTCAAAGGCTCTCTAATGGCCTCTGTGATGACTACGTCAGCCGTCAGGACCCAAGAAGTTTAAGCTCTGGGATAACAACTGTGGGGTCTTTAGACTACTGA 2718 0.4643 MRLSSAGFSPPPQEGEKRVLDPELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADTETDEVYAQMTLQPLNPQEQKEAYLPAELGTPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSQQPPAQELVARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVDMRFRMLFETEESSVRRYMGTIIGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGINSPLLWLRDTDRGLQSLNFQGIGVSPWMQPRFDSSVLNMQTDMYQAMAAAALQDMRSVDPSKQHPASLLQFQQPQNFPNRSAALMQAQMLQQSQPQQVFQNNQESQHPLQSQPQTQTHLQPHLQHQHSINSQHNYHNQQQQQQQTQLQQQVVDNQQQITSVVSTMSQFVSAPQPQSPPMQAIASLCHQQSFSDSNGNPVTTNVSPLHSILGSFPQDETSHLLNLPRTNSWVPVQNSSAWSSKRVALDPLLSSGASQCVLSQVEQLGQPQNTMSQNAVTLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPSSLLVHNGMSSLKGVSSNSCPSTMPYQSSNYLNTTCTDSSLNHGITHSISDSGILQAPENAGHGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGLCDDYVSRQDPRSLSSGITTVGSLDY 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3011g00012 905 SUPERFAMILY CAD & PB1 domains 772 847 - -
Gabi3011g00012 905 Gene3D - 291 363 - -
Gabi3011g00012 905 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gabi3011g00012 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 861 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3011g00012 905 MobiDBLite consensus disorder prediction 481 542 - -
Gabi3011g00012 905 ProSiteProfiles PB1 domain profile. 772 856 IPR000270 GO:0005515
Gabi3011g00012 905 SMART B3_2 127 229 IPR003340 GO:0003677
Gabi3011g00012 905 FunFam Auxin response factor 125 229 - -
Gabi3011g00012 905 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Gabi3011g00012 905 Gene3D - 125 228 IPR015300 -
Gabi3011g00012 905 FunFam Auxin response factor 768 861 - -
Gabi3011g00012 905 FunFam Auxin response factor 291 363 - -
Gabi3011g00012 905 Pfam AUX/IAA family 763 857 IPR033389 -
Gabi3011g00012 905 Gene3D - 769 861 - -
Gabi3011g00012 905 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3011g00012 905 Coils Coil 531 551 - -
Gabi3011g00012 905 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gabi3011g00012 905 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3011g00012 Gabi-Chr3011 99713 106621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3011g00012 1 483 B3 DNA Binding Superfamily AT1G30330 86.270 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3011g00012 AUX_IAA 4.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3011g00012 - - gmx:100798719 1532.69