Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3011g00006 ATGGAAATGCTCAGAGAGAAATGGGAGAGGCCAATTAAAATGGCAAAGTATAGTTCAAGTTATAGTAATTCTGCTTTGGTTTATCATGGTGTTCTACTTCCCCTTCTTCTTTTATCACAGATTTCCTTTCCATTTGCCACGTGTGGATCCTTAGTACAGTTCCTTCCTGGATTCGAGGGACCCCTTCCTTTTGTGCTTGAAACCGGGTATGTGGGAGTTGGTGAATCAGAGGATGTGCAAGCCTTCTACTACTTCGTTGAGTCAGAGAACAATCCAAAGGAGGATCCTCTCATGCTTTGGCTAACGGGTGGTCCTGGTTGCTCTGCCTTGTCTGGCCTTTTCTTTGAACTAGGTCCACTTGCACTTATAAAAGAGGATTACAATGGGAGCGTGCCTAATTTGGTCTTGAGGTCAAATTCATGGACAAAGGCAAGTAGCATTATATTTGTAGATTTGCCTGTTTCCACGGGTTTCTCTTATGCCACAACCGAGTCTGCTGCTCAACGAAGTGACTGGAGACTAGTTCACCATTTCCATCAATTTCTTAGGAAGTGGCTGATTGACCATCCAAAATTTCTGTCAAATGAGGTTTACATTGGTGGCGATTCATACTCTGGCATTCCTATTCCAGTCATTGTTCAAGAGATTTCACAAGGAAATGAAAAAGGGATCAAACCATGGATAAATCTCCAGGGATACCTGCTGGGGAATGCCGCAACAACTGGAAAGGAAACAAACTATAAAATCCCCTTTGCTCATGGAATGGGACTTATTTCTGATGAACTATACGAGTCACTGCAAAAAAATTGTAGAGGAGAGTATGTAAATGTTGACACCGAAAATGTGCTCTGTTCAAGAGATATCCAGTCCTTCAATGAGGATACATCAGGACTTAATACGGCTCATATTTTGGATCCGGTATGCGATTGGCTTGAGACTGAAGTTTCTTGGAGGAGATCTCTAGTTCAGAAATATCCTTGGAAGTACCTCAATAGCCATCTCAAACTGCCACCCTTAAGCTGTCGGAGTTATGTATACTTCCTTTGCGGTTATTGGGCCAATGATGATAATGTTCGCAAGGCACTGCACATACGCAAGGGAAGTATAGGGAAATGGCATCGTTGTTCCTTCGAGATACCAAACAAGCACGACATTTTAAGCAGCTATGAGTATCATGTAAATCTCAGTAGAAAAGGCTATCGTTCACTGATATACAGTGGGGATCATGACATGTCGGTTCCTTTCTTGGCGACTCAAGCGTGGGTAAGATCTTTGAACTACTCCATTGTGGATGATTGGAGGCAATGGTATACAAATGGCCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGTGGAGGGCACACAGCTCCAGAGTACAAGCCCGAAGAATGCTTTGCCATGTACAGTAGGTGGATATCTAATAGTGCTCTCTAG 1461 0.4319 MEMLREKWERPIKMAKYSSSYSNSALVYHGVLLPLLLLSQISFPFATCGSLVQFLPGFEGPLPFVLETGYVGVGESEDVQAFYYFVESENNPKEDPLMLWLTGGPGCSALSGLFFELGPLALIKEDYNGSVPNLVLRSNSWTKASSIIFVDLPVSTGFSYATTESAAQRSDWRLVHHFHQFLRKWLIDHPKFLSNEVYIGGDSYSGIPIPVIVQEISQGNEKGIKPWINLQGYLLGNAATTGKETNYKIPFAHGMGLISDELYESLQKNCRGEYVNVDTENVLCSRDIQSFNEDTSGLNTAHILDPVCDWLETEVSWRRSLVQKYPWKYLNSHLKLPPLSCRSYVYFLCGYWANDDNVRKALHIRKGSIGKWHRCSFEIPNKHDILSSYEYHVNLSRKGYRSLIYSGDHDMSVPFLATQAWVRSLNYSIVDDWRQWYTNGQVAGYTRTYSNRMTFATVKGGGHTAPEYKPEECFAMYSRWISNSAL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3011g00006 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 51 470 IPR001563 GO:0004185|GO:0006508
Gabi3011g00006 486 FunFam Carboxypeptidase 340 485 - -
Gabi3011g00006 486 Pfam Serine carboxypeptidase 56 483 IPR001563 GO:0004185|GO:0006508
Gabi3011g00006 486 Gene3D alpha/beta hydrolase 61 486 IPR029058 -
Gabi3011g00006 486 FunFam Carboxypeptidase 388 483 - -
Gabi3011g00006 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 160 IPR001563 GO:0004185|GO:0006508
Gabi3011g00006 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 149 IPR001563 GO:0004185|GO:0006508
Gabi3011g00006 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Gabi3011g00006 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Gabi3011g00006 486 FunFam Serine carboxypeptidase-like 11 46 486 - -
Gabi3011g00006 486 SUPERFAMILY alpha/beta-Hydrolases 52 483 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3011g00006 Gabi-Chr3011 62307 73835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3011g00006 46 75 Calmodulin-binding Proteins AT2G22960 70.000 2.20e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3011g00006 K16296 - gmx:100792006 826.624