Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3011g00001 ATGGCACAGAACAACGCAGAGGTGCCAGCAACATCTTCATCACAACATGAAAGAGACAAAGCTAACCAAAAAGTTCCATTCTACATGCTCTTCACTTTTGCGGATCACCTTGACGTGGCGTTGATGATCATTGGCACGATTAGTTCCGTCGCTAATGGCTTGTCACAGCCTCTCATGACCGTTATCTTAGGGAAAGTCATCAACACTTTTGGCTCCACCGATCCATCACGTACTATCAACGAAGTTTCTAAGGTTTCATTATTATTTGTTTACCTGGCTATTGGCTCTGGAATAGCCTCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATCCGTGGCTTGTACTTGAAAACTATATTAAAGCAGGACATTGCCTACTTTGACACTGAAACAACAACTGGCGAGGTCATTGGAAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTTTTGGTGGCTTTGTGATTGCCTTTATAAAAGGATGGCGACTAGCTGTAGTTTTGCTTGCATGTGTACCTTGTGTCGTCATTGCTGGTGGAGTTATGTCCATGTTGATGGCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAGCAAACAGTTGGAGCTATTAGAACTGTTGCATCTTTTACTGGCGAGAAAAAAGCAATAGAACAGTATAATAGCAAGTTAAAAGTTGCTTATTCTTCGATGGTTCAACAAGGGATGGCCTCGGGATTAGGAATGGGAGTGCTTTTGTTGATTATCTTCTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAACTGGTTGTTGAGCATGGATACAATGGTGGAACCGTCATGAATGTAATCATAGCTCTTATGACTGGTGGAATGTCACTTGGTCAGACATCCCCAAGTCTAAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCTTATGATACCAGTGGTGTTGTCTTGGAAGACATAAAGGGAGATGTTGAACTCAAAGATGTTTACTTCACATACCCTGCAAGGCCAGATGTGCAGATCTTTGCTGGATTCTCATTATATGTTCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTAATAAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTGCTTATAGATGGCGTGAATTTGAAGAATTTTCGACTTAAATGGATAAGAGAACAGATTGGGCTGGTTAGTCAAGAACCTATCCTTTTCACGGCCAGTATCAAAGAGAACATAGCTTATGGGAAAGAAGATGCAACTGATGAGGAGATAACAATAGCAATAACACTTGCCAATGCCAAAAAGTTCGTTGACAAGCTGCCTCAGGGCCTTGACACAATGGCAGGACAGAATGGCACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCGATTGCAAGGGCAATTTTGAAGAACCCGAAAATCCTTCTTCTTGATGAAGCAACAAGTGCTTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTAGATAAAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCTCATCGTCTAACAACTATTAGAAATGCTGACACCATTGCAGTGGTTCAACAGGGCAAAATTGTGGAGAAAGGAACTCATGATGAGTTGATCATGGATACTGATGGAGCTTATTGCCAGCTTATTCGTCTACAAGAAGGACAAAAAGAAGCTGAAGGTAGCGGGAATACTGAAGCAGATAAGTCAAGAAACAGTTTCAATATAGATAGTCACATGGATAGATCTTCAAGCCAAAGAACATCCCTTGTGAGATCAATAAGCCGAGGTTCATCAGTGAGTCGACACTCCCAGTCATTTAGCTTTGCTCTTCCTCATACAATTGAAAACGTTCAAACTGAAAATAAGAGGCCCAAAAAGGTTTCTATTAAACGGTTGGCCTACTTGAACAAGCCTGAGGTTCCTGTCTTACTGATTGGATCCTTTGCTGCAGCAGTACAAGGTGTTGTGTTCCCTATATTTGGCTTCTTGTTTTCATCAGCTACTACTATGTTCTATGAACCTCCAGAGCAGCAGAGGAAAGATTCTAGGTTCTGGGCACTTCTATATGTTGGTTTGGGTTTAGTTTCTCTGGTGGCATTACCAACGATGAATTACTTCTTTGGGGTTGCTGGTGGAAAACTTATAGAAAGAATCCGTTCATTGACATTTGAAAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCTAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAATGGTGAAAAGTCTTGTTGGTGACACCTTGGCCCTCATTGTGCAAAACATATCAACAATCACTGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTCGCTTTTATAATTCTGGCTGTGTCTCCCTTGGTCCTTATTCAAGGATTCGTTCAGATGAAGTTTCTAAAAGGATTCAGTGCAGATGCTAAGGTGATGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACCGTTGCATCATTTTGTGCTGAATCGAAGGTGATGGATATGTACAGGAAGAAATGTATAGGTCCAGAACAAGAAGGTGTTCGGTTGGGCCTTGTTAGTGGTGCAGGATTTGGTTTCTCATTTTTGGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGCAACACGGGAAAGCGACTTTTGCAGAGGTTTTCAAGGTTTTCTTTTGTTTAACAATTACAGCAATGGGGCTTTCCCAGACTAGTGCATTGGCACCAGACACTAACAAGGCCAAAGATTCCACAGCTTCAATATTTGAAATTCTTGATAGGAAACCTATTATTGACTCCAGCAGCAATGAGGGTATGACACTGGAAACAGTAACAGGTAATATTGAACTTCAACATGTCAGTTTTAGTTATCCAACAAGGCCTCATATTCAAATTTTCAAAGACCTGAGTCTAAGCATCCCATCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATCAGCCTCTTAGAGAGGTTTTACAACCCTGATTCTGGACAAGTACTACTAGATGGAGTGGATATCAAAATGTTCAGACTAAGCTGGCTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAAGGAGGTGCAACCGAGGATGAGATAATTGTAGCAGCACAAGCAGCTAATGCACACGGCTTCATAAGTTCTCTTCCAAATGGTTATGACACCCCAGTTGGAGAAAGAGGGACACAATTGTCAGGAGGGCAAAAGCAGCGTATTGCCATTGCAAGAGCCATGCTGAAAGACCCCAAAATCCTTTTGCTAGATGAGGCAACAAGTGCACTTGATGCAGAGTCAGAACGTATAGTCCAAGAGGCTCTAGACAGAGTCAGTTTGAACAGAACTACTGTGGTGGTTGCTCACCGTCTTACAACAATTAGAGGGGCTGACATTATATCAGTAATAAAAAATGGGGTGGTTGCTGAAAAGGGAAGCCATGATGTGTTGATGAAGATTAGTGGTGGAGCTTATGCTTCATTGGTAGCTCTACATATGAGTGCATCATAA 3777 0.4196 MAQNNAEVPATSSSQHERDKANQKVPFYMLFTFADHLDVALMIIGTISSVANGLSQPLMTVILGKVINTFGSTDPSRTINEVSKVSLLFVYLAIGSGIASFLQVSCWMVTGERQAARIRGLYLKTILKQDIAYFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLASTFFGGFVIAFIKGWRLAVVLLACVPCVVIAGGVMSMLMARMSSRGQAAYAEAGNVVEQTVGAIRTVASFTGEKKAIEQYNSKLKVAYSSMVQQGMASGLGMGVLLLIIFCTYGLAMWYGSKLVVEHGYNGGTVMNVIIALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDIKGDVELKDVYFTYPARPDVQIFAGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFRLKWIREQIGLVSQEPILFTASIKENIAYGKEDATDEEITIAITLANAKKFVDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALDKVMSKRTTVVVAHRLTTIRNADTIAVVQQGKIVEKGTHDELIMDTDGAYCQLIRLQEGQKEAEGSGNTEADKSRNSFNIDSHMDRSSSQRTSLVRSISRGSSVSRHSQSFSFALPHTIENVQTENKRPKKVSIKRLAYLNKPEVPVLLIGSFAAAVQGVVFPIFGFLFSSATTMFYEPPEQQRKDSRFWALLYVGLGLVSLVALPTMNYFFGVAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASMVKSLVGDTLALIVQNISTITAGLVISFTANWILAFIILAVSPLVLIQGFVQMKFLKGFSADAKVMYEEASQVANDAVGSIRTVASFCAESKVMDMYRKKCIGPEQEGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFAEVFKVFFCLTITAMGLSQTSALAPDTNKAKDSTASIFEILDRKPIIDSSSNEGMTLETVTGNIELQHVSFSYPTRPHIQIFKDLSLSIPSGKTVALVGESGSGKSTVISLLERFYNPDSGQVLLDGVDIKMFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIVAAQAANAHGFISSLPNGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESERIVQEALDRVSLNRTTVVVAHRLTTIRGADIISVIKNGVVAEKGSHDVLMKISGGAYASLVALHMSAS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3011g00001 1258 Gene3D - 1005 1257 IPR027417 -
Gabi3011g00001 1258 Pfam ABC transporter 385 531 IPR003439 GO:0005524
Gabi3011g00001 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Gabi3011g00001 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 694 980 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3011g00001 1258 Pfam ABC transporter transmembrane region 42 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3011g00001 1258 Pfam ABC transporter transmembrane region 693 966 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3011g00001 1258 FunFam ABC transporter B family member 1 354 603 - -
Gabi3011g00001 1258 Gene3D ABC transporter type 1, transmembrane domain 29 619 IPR036640 GO:0005524|GO:0016020
Gabi3011g00001 1258 Gene3D - 354 603 IPR027417 -
Gabi3011g00001 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1253 IPR027417 -
Gabi3011g00001 1258 SMART AAA_5 391 577 IPR003593 GO:0016887
Gabi3011g00001 1258 SMART AAA_5 1042 1235 IPR003593 GO:0016887
Gabi3011g00001 1258 MobiDBLite consensus disorder prediction 615 637 - -
Gabi3011g00001 1258 FunFam ABC transporter B family member 9 29 359 - -
Gabi3011g00001 1258 Pfam ABC transporter 1034 1183 IPR003439 GO:0005524
Gabi3011g00001 1258 SUPERFAMILY ABC transporter transmembrane region 675 996 IPR036640 GO:0005524|GO:0016020
Gabi3011g00001 1258 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Gabi3011g00001 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3011g00001 1258 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 998 - -
Gabi3011g00001 1258 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524|GO:0016887
Gabi3011g00001 1258 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Gabi3011g00001 1258 CDD ABC_MTABC3_MDL1_MDL2 1015 1251 - -
Gabi3011g00001 1258 PANTHER ABC TRANSPORTER B FAMILY 7 605 IPR039421 -
Gabi3011g00001 1258 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 325 - -
Gabi3011g00001 1258 MobiDBLite consensus disorder prediction 606 637 - -
Gabi3011g00001 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1252 IPR003439 GO:0005524
Gabi3011g00001 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 602 IPR027417 -
Gabi3011g00001 1258 SUPERFAMILY ABC transporter transmembrane region 32 348 IPR036640 GO:0005524|GO:0016020
Gabi3011g00001 1258 Gene3D ABC transporter type 1, transmembrane domain 658 1003 IPR036640 GO:0005524|GO:0016020
Gabi3011g00001 1258 FunFam ABC transporter B family member 1 673 981 - -
Gabi3011g00001 1258 FunFam ABC transporter B family member 1 1005 1255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3011g00001 Gabi-Chr3011 9722 16057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3011g00001 9 1254 Calmodulin-binding Proteins AT2G36910 45.051 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3011g00001 K05658 - gmx:100801771 2050.4