Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi300g00004 ATGGCATTCCTTCCTCAACCCCAAGAAGGTGCCGAAGAAGACACCAACGTCGACGTTCACACAACCCGTGGTACACCCATTCGGTACCTCCCGCTCGATCACCTCTACTCCGCCACGTCACCTTGCCGCGTCACCGCCAGTGGCTCATCCAACGTCATGTCCAAGAAGGTCAAGGCTCGTAAGCTCAACCTTAACAACCATAACAACCATTTCAATGATAATGATAATAATGGGAATGATAATGATAGCGATAACGATAACGATAACGATAACGATCCACCGCAACTCGATCATCGCAACAACAAGAAAGCGACGCCGTTTTTGCTGCTTCCGAAACCCCCTCTTCTCTACGTCTACTCTCGCCGCCGCAAGAGGCATTCCTCCGGGAGGGCGTCGTTTTATGATTCCGTGCTGGGTCGGGTCGAGTCCGGTTCGGGGGTGAAGGACCCGGAGGAGGAGAATGGGGATTCCGAGAGGAGGTTGCTGAAGAAGAGGAAAACTGGGAGCACTGAGTTGGGGAAATTGGGTGTGGATTTGAGCGCCTTGGGGAATCTCGATGGGCCTCGATTGAGGGAATGCCGCAACCAATTTGGGAATTCTGGCATTGCTGGGAACGCCAAGTGTGGTTCATTGGAGAATTTCCCAAAGTTGCTGCCTGAATCTCGCACTGTGAAGAGATGGGTCGGGTTGAGTTTTGATAATGCTGATCCGGAGGCATTTGTTGGATTGCGATGCAAGGTTTATTGGCCCATGGATTTAAGATCGTACACAGGCGTTGTCAAAGGTTATGATGTGGAAACTAAGATACATCATGTCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATGTAAAATACCATGTTTCCCGTGATGAGATGAAACGTTTAAAATTAAATTTTGCCAAAGTTCGTGACAGTAATGTATCTGACTATGATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTGAAAACGTTTTTAGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCACCGGACTTCTTACTGATCTACACTCAAAGTGCAAGAAACCTAGTTTTATTGAAGCTTTAGAAGAAGCAAAAAGGTATTTAGGTGAACAGAAGCTTCCTTTGGAGATGCTAGAGTTGCGGAAAAGATGTACAGCTGATGACTGTAACAATGTAAGTGGAGAGGATAGCGGATGTACAGATTCAGGTGAAGATTGTTTAAATGACAAAGGGATTTGGACAGCACTGGAAAAAGTTGAAACTTTTCCTTATGATGTAGGAGATTTGAAAATTCTAAGCCTTGGAAAAATGGTTGAAGATTCTACGTCTTTCGGGGATGGAAGATCCATCTGGCCTGAAGGATACACAGCAGTGAGGAAGTTTACTTCAGTTATTGATCCTAAAGTATCTGCCCCTTACAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTCCGACCTCTATTAAGAGTTACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACTCCATCTGATTGCTGGAATCAAGTATACAAAAGGATAAAGAAATTGGAAAAGGATGCTTCTGAAGGTTCTGTTGCTGAAGGTGGGATAGAAAGGGGCTACAATTCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTCGCTAAACTTATACGGGGATTATCTAAATCCAAAGTCTCTTCAAAGAACTCAGTTCGCAATTTTGATTCCAGAAGATATAATGACTTGCCTCTTGGTTATAGACAGGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTATTAATGGAGTGCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCCCCCCCACCTTGCTGTTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACGGATGGACGGTGGGCTCATTTGGCCTGTGCCATGTGGATACCTGAGACTTGCTTAGCTGATGTCAAAAGAATGGAGCCGATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAGTTCTTGTCGGGTAGCTTATCATCCACTTTGTGCACGTGCTGCCGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTTTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTCTCTTTCTGCAAGAAACATAGGCAGCCATCTAATGAACATGCTGTTGCTGATGAACGTATTGTTCGAGTTGCCGGTCAATGTTCAGACTATGAACCACCACCCAATCCGTCGGGTTGTGCTCGAAGTGAGCCGTACGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCTCTTGCAGCTGCATCATTGAAACGTTTGTTCGTAGAGAATCAGCCTTACTTAGTTGGTGGATACTGCCAGCATGGATTGTTAAACAACCTAGAGTCTTCTGGGAGAGGAGTTTGCCCAAAATTCTTTTGTAGCCAACAAAGACTGAGAACCTCTCTGATTGATGCTTCGAACAGCATACTTTCTATTGCTGAAAAATATAAGTACATGAGGGAAACCTTTCGAAAACAGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGTATCTTCGCAAAGCATCCATATAAAGGCGGAGATATGGTGATTGAATACACTGGTGAACTTGTTAGACCTCCCATAGCCGACCGGAGAGAGCACTTTATATACAATTCGTTGGTGGGTGCAGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCCGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTTATTAGCGTTAATGGCGATGAGCATATTGTAATATTTGCAAAGAGGGACATCAAACAATGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGGCTTGCATGTTACTGTGGCTTCCCAAAATGCCGAGGTATAGTAAATGATACTGAGGCAGAAGAGCGAGCCACTACCCTATATGCACCACGAAGTGAATTAATAGATTGGAGAGGAGAATAA 3354 0.4389 MAFLPQPQEGAEEDTNVDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLNLNNHNNHFNDNDNNGNDNDSDNDNDNDNDPPQLDHRNNKKATPFLLLPKPPLLYVYSRRRKRHSSGRASFYDSVLGRVESGSGVKDPEEENGDSERRLLKKRKTGSTELGKLGVDLSALGNLDGPRLRECRNQFGNSGIAGNAKCGSLENFPKLLPESRTVKRWVGLSFDNADPEAFVGLRCKVYWPMDLRSYTGVVKGYDVETKIHHVKYDDGDEENLILSNENVKYHVSRDEMKRLKLNFAKVRDSNVSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKTFLGGRSVPVQFFGTHDFARVRLQQVKSFLTGLLTDLHSKCKKPSFIEALEEAKRYLGEQKLPLEMLELRKRCTADDCNNVSGEDSGCTDSGEDCLNDKGIWTALEKVETFPYDVGDLKILSLGKMVEDSTSFGDGRSIWPEGYTAVRKFTSVIDPKVSAPYKMEVLRDPESKVRPLLRVTVDGGEQFNGYTPSDCWNQVYKRIKKLEKDASEGSVAEGGIERGYNSGSDMFGFSNPKVAKLIRGLSKSKVSSKNSVRNFDSRRYNDLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPINGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHAVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGLLNNLESSGRGVCPKFFCSQQRLRTSLIDASNSILSIAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIVIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERATTLYAPRSELIDWRGE 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi300g00004 1117 ProSiteProfiles FYR domain FYRC motif profile. 540 627 IPR003889 GO:0005634
Gabi300g00004 1117 Pfam F/Y-rich N-terminus 483 533 IPR003888 GO:0005634
Gabi300g00004 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 829 IPR013083 -
Gabi300g00004 1117 Pfam PHD-finger 664 698 - -
Gabi300g00004 1117 ProSiteProfiles FYR domain FYRN motif profile. 477 536 IPR003888 GO:0005634
Gabi300g00004 1117 CDD SET_SETD1-like 941 1089 - -
Gabi300g00004 1117 SMART PHD_3 761 827 IPR001965 -
Gabi300g00004 1117 SMART PHD_3 651 698 IPR001965 -
Gabi300g00004 1117 ProSiteProfiles Post-SET domain profile. 1077 1093 IPR003616 -
Gabi300g00004 1117 CDD PHD_ATX1_2_like 651 697 IPR042010 -
Gabi300g00004 1117 ProSiteProfiles Extended PHD (ePHD) domain profile. 703 827 IPR034732 -
Gabi300g00004 1117 MobiDBLite consensus disorder prediction 65 107 - -
Gabi300g00004 1117 SMART PWWP_4 334 398 IPR000313 -
Gabi300g00004 1117 Gene3D - 478 618 - -
Gabi300g00004 1117 Pfam PHD-zinc-finger like domain 705 826 - -
Gabi300g00004 1117 FunFam Histone-lysine N-methyltransferase 886 1110 - -
Gabi300g00004 1117 Gene3D - 324 434 - -
Gabi300g00004 1117 SUPERFAMILY FYVE/PHD zinc finger 643 713 IPR011011 -
Gabi300g00004 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 697 IPR013083 -
Gabi300g00004 1117 Gene3D SET domain 909 1106 IPR046341 -
Gabi300g00004 1117 CDD ePHD_ATX1_2_like 712 826 IPR041956 -
Gabi300g00004 1117 ProSitePatterns Zinc finger PHD-type signature. 652 697 IPR019786 -
Gabi300g00004 1117 MobiDBLite consensus disorder prediction 1 22 - -
Gabi300g00004 1117 Pfam SET domain 964 1070 IPR001214 GO:0005515
Gabi300g00004 1117 ProSiteProfiles SET domain profile. 953 1071 IPR001214 GO:0005515
Gabi300g00004 1117 Pfam F/Y rich C-terminus 542 617 IPR003889 GO:0005634
Gabi300g00004 1117 SMART set_7 953 1077 IPR001214 GO:0005515
Gabi300g00004 1117 SUPERFAMILY SET domain 951 1090 IPR046341 -
Gabi300g00004 1117 SMART fyrc_3 544 638 IPR003889 GO:0005634
Gabi300g00004 1117 CDD Tudor_Agenet_AtEML-like 241 291 - -
Gabi300g00004 1117 ProSiteProfiles PWWP domain profile. 336 399 IPR000313 -
Gabi300g00004 1117 Pfam PWWP domain 337 424 IPR000313 -
Gabi300g00004 1117 SUPERFAMILY Tudor/PWWP/MBT 330 432 - -
Gabi300g00004 1117 CDD PWWP_AtATX1-like 335 430 - -
Gabi300g00004 1117 ProSiteProfiles Zinc finger PHD-type profile. 649 700 IPR019787 -
Gabi300g00004 1117 PANTHER PHD FINGER PROTEINS 48 1101 - -
Gabi300g00004 1117 Gene3D - 234 286 - -
Gabi300g00004 1117 SMART fyrn_3 492 536 IPR003888 GO:0005634
Gabi300g00004 1117 FunFam Histone-lysine N-methyltransferase 701 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi300g00004 Gabi-Chr300 40225 53733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi300g00004 652 797 C2H2 Transcription Factor Family AT3G14740 40.397 3.44e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi300g00004 zf-HC5HC2H_2 4e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi300g00004 - - gmx:100808923 1910.96