Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi300g00002 ATGGTTCCTTATTCTCAAAACGGGAAACAAATAATTAATAGGAGTGCTAATTATGTTATTTATGGTAACACAACAAGTCATGCTATGAACCAAGTTGAAGTTGAAGTTGAAGGTTACAATTGCTTAGTAGGATCTGATTTTGTGGTGAGTAGGCACATGGCTGATGAAGAGGAATCAAGAACTAACACAAACACAATTACTACTCAATATCATCATAATAACGAACCTGAGGCTGAACCTCAACCTGAACCTGAACCTGAAGCTGGTTCCACCTCAAAGGACGAAGAAGAAGAAGAAGGAGCAAACAACAACAACAATAGGAATAACTGGCTTCAATTAAGCATAGGTTTTCATCAGACTCACGCGGCTGTGGCGGCGACAACCACCAAGCACGACCGTGATCACCACCACCATCGTCATCACAGAGCGAGCTCAATGGCTCCAACAAGCGGCTCAGGACTTGTGGAGTTAGACTTGTTACCGGCTGCTACTGGGAGACATTTGAATTGGGCTTCTTCACGGCGGAGCATGGAGCCTCCGGTGGTGGCTGCGGCCGCGGCGGAGGGGAGGAGTTGTTGTCAAGGAGGGTCTAGTTTTGGTGGTTCTTTGGTTTTAGAACAAACTTCAAACATGTCAATAGCAAGTGGTCCAACATTTGGTCATCGCCATCAACAACAACAACAACATCATCAAGAGATAATGAACTGGGCATTTGGATCATCTTATTTTCCTCCACCCTTTCATTTCCCTTCTTCTGGGTTTGATCATCAATTTGATGTGGCTGGACCAAGCTCCCATGTCACAGTTAGAGTTGTTGATCCTCCTCCTAGACCTCATTCTGGAATATGGTTTATGCTACAAGCCTCCCAAAACCAAGCGAAAGAACCATTCTTGCCCCAGATACCTAAGAACTACCTTAGAATCAAAGATGGAAGAATGACGGTTCGGTTGCTATTGAAGTATCTGGTTAGCAAACTCAGGCTTGAGAACGAATCAGAGATAGAGATAACATGCAGAGGGCAGCAACTTTTACCTTTCTTTACGTTGCAGCATGTGAGGGATAACATTTGGACTCCGAGGGACACCACAAGAACTTTGCTTTCAGATTCCTCAACCACAGATCATGTCATGGTTCTCCATTACGGTAGAAGCACTGCTTAA 1161 0.4444 MVPYSQNGKQIINRSANYVIYGNTTSHAMNQVEVEVEGYNCLVGSDFVVSRHMADEEESRTNTNTITTQYHHNNEPEAEPQPEPEPEAGSTSKDEEEEEGANNNNNRNNWLQLSIGFHQTHAAVAATTTKHDRDHHHHRHHRASSMAPTSGSGLVELDLLPAATGRHLNWASSRRSMEPPVVAAAAAEGRSCCQGGSSFGGSLVLEQTSNMSIASGPTFGHRHQQQQQHHQEIMNWAFGSSYFPPPFHFPSSGFDHQFDVAGPSSHVTVRVVDPPPRPHSGIWFMLQASQNQAKEPFLPQIPKNYLRIKDGRMTVRLLLKYLVSKLRLENESEIEITCRGQQLLPFFTLQHVRDNIWTPRDTTRTLLSDSSTTDHVMVLHYGRSTA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi300g00002 386 PANTHER RING FINGER PROTEIN 23 384 IPR044171 GO:0007275
Gabi300g00002 386 MobiDBLite consensus disorder prediction 126 152 - -
Gabi300g00002 386 MobiDBLite consensus disorder prediction 72 108 - -
Gabi300g00002 386 Gene3D - 276 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi300g00002 Gabi-Chr300 8740 18505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi300g00002 295 382 C3H Transcription Factor Family AT3G23060 35.870 5.15e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi300g00002 - - lja:Lj1g3v3138970.1 350.517