Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3008g00001 ATGGAGATTGAGAAATTAGAGATAATAACAAGGATCCTTCTCAACATTCTCGACGAGATTAATGACAGCATCTCTGTATATATCCCTGCTTCCTTTGCAGTTAGACTGGAGCCTGCCATGCTGACTATGCACAAATCCGAGACGAAGGGTGATGCAATGAAGCAGTCTCTTGATCCTTCATCCTGGGGTCCTTCCAAGATTCCATCTATAAATATACCTAGAAAATCGGGGCACAGTGCTTGGGAGGTTTTATCTGGATCTGATTCCTTCCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCTGCATGAAAATTTGAACTTAAATGACGCTAAAAATGTTTATCAATCTGTTGATGACATCTCATCTGGCTTTGAAAAGCTCCATCAAGATGTAGAGGGCAATAATCCACTTGAAGATAGTGATGCTCATGCAATTGGAACCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACCTAAGTGGTTTACCCGGTTCCCTTGAGGACTTGGAATTGGAAGAGTATGATCTTTTTGGTAGCGGTGGAGGTATGGAACTAGAAACTGATCCCCAGGAAAGTCTCAATGTTGGTATGTCTAAGTTAAACTTCTCTGATGGTACTGTTGGCAATGATTTACCCCATTATTCTTTTCCTAATGGTGCGGGAACTGTTGCTGGAGAACATCCATATGGTGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAACTGAGATCTCTTTTTGAGCAACATGGTGATATTAGAACGCTATATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGCGCTGCTCGATCAGCTATGCGTGCATTGCAAAACAAACCTCTGCGGCGCAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATGTCAACCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCACCTGTAGCCAACTCTCCGCCAGGTAATTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATGAATCATTCTCCTGGTTCTAGGATCATGAGCCCAAATACAGGCAATAATTTATCAGGATTAGCTTCAATTTTGCAACCACAGGTATCAAACACCATAAAGGGCGCAACTATTGGCAAGGACTTGGGAAGGAGTAGTCATGGAGAGCACATATATACCAATATGAATTCATCACACGGAGTTTCTTTTCAGTCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGAGCTTTATCCACTTTTGGTTCATCAACAGCTAATGGATCCTCAGTGGAGACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAAGCCTCTATGAGGAGCATACCAAGCCTTCAGCTTGGCCAAGACCAGCGGTGGGGCATCCATTTACTTCGAATGGAAAGAGCCATGCCTTTCCATACTCAAGTCAGAATAATTCCTTTGTCGGTTCATCCCAGCATCATCACCATCATCATGTTGGCTCTGCTCCATCAGGTTTACCTTTTGAAAGGCATTTTGGTTTCCTTCCTGAGTCACCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGGGTTTGGGCAACAATGATGGAAATTACATGGTTAATGTGGGTGGGTCTGTTAATGCTGGCATTACTGTACCAAGAAATATGTCTGATAATGGTTCATCAAACTTCAGAATGAGGTCTTCTCCGAGGCTTAGCCCTGTTTTTTTAGGTACTGGTCCTTATCTGGGACTGCCACCTACCACCATGGAGAGCTTGACTGACCGTACTCGGAGTAGATGGATAGAGAACAATGGGAACCAAGTTGATAGCAAGAAGCAATTTCAGCTTGACCTGGATAAGATTAAAAGTGTTGAAGATACAAGGACTACATTAATGATAAAAAATATCCCTAATAAATATACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACATATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCTTTTATCAACATGCTGTCACCCGCGCTTATTATTCCATTCTACGAGACATTCAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGAAAGACTGCCCTTGTGAGCCACTTTGAAAATTCAAGCTTGATGAATGAAGATAAGCGCTGCCGCCCTATTCTGTTTCACTCAGAGGGTCCTGAAGCTGGTGATCAGATCATACAAGAGCATTTTCCTTCCAACTCCAACAATCTAAATATTCAGGCACCTAGGTCAACTGAGTTACATTCAAGTGATACTCCTGGAATCCCTTCAATGGATGGCCCTCCTATGATCTTGGATACAATTTAA 2748 0.417 MEIEKLEIITRILLNILDEINDSISVYIPASFAVRLEPAMLTMHKSETKGDAMKQSLDPSSWGPSKIPSINIPRKSGHSAWEVLSGSDSFHASSDASLFSSSLPVLLHENLNLNDAKNVYQSVDDISSGFEKLHQDVEGNNPLEDSDAHAIGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLELEEYDLFGSGGGMELETDPQESLNVGMSKLNFSDGTVGNDLPHYSFPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQHGDIRTLYTACKHRGFVMISYYDIRAARSAMRALQNKPLRRRKLDIHFSIPKDNPSDKDVNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQTMNHSPGSRIMSPNTGNNLSGLASILQPQVSNTIKGATIGKDLGRSSHGEHIYTNMNSSHGVSFQSHSLPEPKFSQYRGALSTFGSSTANGSSVETLSGPQFLWGSPSLYEEHTKPSAWPRPAVGHPFTSNGKSHAFPYSSQNNSFVGSSQHHHHHHVGSAPSGLPFERHFGFLPESPETSFMNNVGYGGMGLGNNDGNYMVNVGGSVNAGITVPRNMSDNGSSNFRMRSSPRLSPVFLGTGPYLGLPPTTMESLTDRTRSRWIENNGNQVDSKKQFQLDLDKIKSVEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPALIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFENSSLMNEDKRCRPILFHSEGPEAGDQIIQEHFPSNSNNLNIQAPRSTELHSSDTPGIPSMDGPPMILDTI 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3008g00001 915 Gene3D - 236 331 IPR012677 -
Gabi3008g00001 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 321 IPR000504 GO:0003723
Gabi3008g00001 915 Gene3D - 332 431 IPR012677 -
Gabi3008g00001 915 CDD RRM3_MEI2_like 752 837 IPR034454 -
Gabi3008g00001 915 Pfam RNA recognition motif 2 749 844 IPR007201 -
Gabi3008g00001 915 MobiDBLite consensus disorder prediction 591 607 - -
Gabi3008g00001 915 CDD RRM1_MEI2_like 247 323 IPR034453 -
Gabi3008g00001 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 335 400 IPR000504 GO:0003723
Gabi3008g00001 915 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 314 IPR000504 GO:0003723
Gabi3008g00001 915 FunFam Protein MEI2-like 1 332 427 - -
Gabi3008g00001 915 MobiDBLite consensus disorder prediction 591 620 - -
Gabi3008g00001 915 FunFam MEI2-like protein 5 isoform 2 237 331 - -
Gabi3008g00001 915 SUPERFAMILY RNA-binding domain, RBD 751 835 IPR035979 GO:0003676
Gabi3008g00001 915 SUPERFAMILY RNA-binding domain, RBD 245 408 IPR035979 GO:0003676
Gabi3008g00001 915 PANTHER RNA RECOGNITION MOTIF-CONTAINING 89 889 - -
Gabi3008g00001 915 SMART rrm1_1 334 402 IPR000504 GO:0003723
Gabi3008g00001 915 SMART rrm1_1 249 317 IPR000504 GO:0003723
Gabi3008g00001 915 SMART rrm1_1 751 827 IPR000504 GO:0003723
Gabi3008g00001 915 CDD RRM2_MEI2_like 332 402 - -
Gabi3008g00001 915 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 406 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3008g00001 Gabi-Chr3008 6090 13148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3008g00001 245 390 Eukaryotic Initiation Factors Gene Family AT1G71770 27.097 8.35e-11 63.9