Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3007g00001 ATGGGCTGGTATGAATACAACACCACATCTTTCCTTAGTATTTTGCTCTTCTTTTGTTTCTGTCCCATTGTATTGTCTATGCTATCTCCAAACCAAACACACACCATTACCGCTGTCTCCAAGCTTTTTGATGCCCCTGTTCCATGGACTACAAACTCAGACCCGTGTACTTGGAAGGGAGTGACTTGTGACCCTAGCAATTCCTCTGTAATCAAGATTAATCTATCTGGGTTTTCACTCTCTTCTTCTGATTTTCTCCCTGTTCTTTGCCAAATTGAAACTTTGGAGCATCTTGATGTCTCCAAGAACCAGCTGGGCTTAATCCCTGATGATTTCATCACTGAATGTGGAAAGAATAAGGGGTTAAAGCTGCTGAATTTTACTGGAAACAATTTAGGTGCTTTACCTACTTTTCATGGATTTCATGGGCTGGAATCCCTGAATTTGTCTTTCAATCACATGGTAGGGAATATTGGTTTAAAGTTAGATGAGTTGGTTAGCCTCAAGAGTTTGGATCTTAGTTTCAATTTGTTCACTGGGTCTCTTCCTACCAACCTGGGAAAGTCCATGGTTCTGGAGGAGCTTGTCCTTTCTGTCAATCAGTTTCAAGGAGAAATCCCTGATGAAATATTGAGTTATGAAAATTTGACTGAGATTGATCTTAGGTCAAATAATCTTTCAGGGTCTATTCCTAGCAATATTGGAAAGCTAACTAAATTGGAAACTTTGATCCTTTCCTCTAATAAACTTACTGGTCAAATTCCAACAGCACTTATGGACATCACTAACCTTTCAAGATTTGCAGCAAATCAAAACAATTTCACGGGTTCTGTACCTCCTGGGATTACTAAATATCTCAGGATTTTGGATCTTAGTTATAATAATCTGTCCGGGTCCATTCCAGAAGATCTTTTATCTCCACCAAAATTGCAGGTTGTAGATTTGTCCCATAATATGTTAAATGGATCATTACCTGCAAAAGTTTCTCGTAGCTTATTCAGGTTGAGATTTGGAGGCAATTCTCTGAGCGGAATTATTCCTTCAGATAATTTTGCAGCACTTCAAGATTTGATGTACTTGGAGCTGGAAAACAATTACTTGACAGGATCTATACCAGCTGGATTGGGTTCTTGCAGGAAATTGGCATTGTTGAACTTAGCTCAGAACCAGTTGAGTGGTGAATTGCCACCACAGCTTGGTAATCTTATCAACCTACAAGTCTTGAAGCTTCAAATGAACAAGCTTAACGGTACAATCCCATTTCAAATTGCCCAACTACATCAGTTGTCAACACTGAATTTGAGCTGCAATTCTCTGAGTGGATCAATTCCATCTGAGATGTCAAGTTTGAGCAAGCTTAATTTCCTGCACTTGCAACAAAACAATCTCAGTGGTTCCATCCCAACATCGATTGGCAATTTGAAATTGCTTATAGAACTCCAACTTGGGGGAAACCAGCTAAGTGGTGAGATTCCAAGCATGCCATTAAGCCTACAGGCTTCGTTGAATCTTAGCAACAACCTCTTTAGTGGACCTATTCCAAGCAGTTTTGGCATTTTGGACAGCCTGGAAATCTTGGATCTCTCAAATAACAAGTTTTCTGGTGCAATTCCTGATGATCTAACAAAAATTTCAGCCTTGACACAGTTGTTACTTTATAACAATCAATTGTCTGGTGTCATTCCAAAATTTGATCGTTATGTTCATGTTGAATCAGCTGGAAATAAAAATCTGGTAAGTACTCCTACACAGGACAACACAACACCCAACATTGTCCCAAGATATGCAAAGAAAGGAATATCTGTTGCTGTGGCAATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGACTTGTCTCTGTGCTGGTTGTGTTAGTCTCGCGACACTATTACAGGGTTAATGATGAGCACTTACAGTCAGGCGAAGATCCTCACCTTCCTCAGGTCATTCAAAGTAATTTGTTAACTCCTAATGGAATTCACAGATCAAGCATTGACTTCTCCAAAGCCATGGAAGCTGTTGCTGAAACGTCAAATGTTACTCTGAAAACTAGGTTTTCAACTTATTATAAGGCCGTTATGCCATCGGGATCAATCTATTTTGTCAAGAAGCTGAACTGGACTGACAAGATATTGCCAGTGGGAAGTCATGATAAATTTGGCAAAGAACTAGAAGTCTTGGCAAAATTGAACAATTCAAATGCCATGACTCCTTTGGCCTATGTTTTGTCCACTGACACTGCTTATATACTATATGAATTTGTCTCAAATGGCTCCCTTTTTGATGTTCTTCATGGAAGCATAGGAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGTGTGGCTCAAGGACTTTCTTTTCTTCATGGATTAGCCTCTAGTCCAATACTACTTCTTGATCTATCAAGCAAAAGTATTTTGCTCAAGTCCCTCAAGGAGCCTCTAGTTGGAGATATTGAACACTACAAGGTGATTGATCCCTCAAGGAGTACAGGGAATTTTTCTGCAGTTGCTGGTTCTGCTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTCATTCTACTTGAATTGCTGACAGGAAAACCTGCAGTGACTGAGGGGACAGAATTGGTCAAGTGGGTTTTGCGTAATTCAACAAATCAAGATTACATTCTTGATTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTCCAGATTGCTCTTGTTTGTGTTAGTACATCCCCAGAAGCAAGACCAAAGATGAAGAGCGTGCTACGGATGCTCCTTAATGCTAGATGA 2850 0.3972 MGWYEYNTTSFLSILLFFCFCPIVLSMLSPNQTHTITAVSKLFDAPVPWTTNSDPCTWKGVTCDPSNSSVIKINLSGFSLSSSDFLPVLCQIETLEHLDVSKNQLGLIPDDFITECGKNKGLKLLNFTGNNLGALPTFHGFHGLESLNLSFNHMVGNIGLKLDELVSLKSLDLSFNLFTGSLPTNLGKSMVLEELVLSVNQFQGEIPDEILSYENLTEIDLRSNNLSGSIPSNIGKLTKLETLILSSNKLTGQIPTALMDITNLSRFAANQNNFTGSVPPGITKYLRILDLSYNNLSGSIPEDLLSPPKLQVVDLSHNMLNGSLPAKVSRSLFRLRFGGNSLSGIIPSDNFAALQDLMYLELENNYLTGSIPAGLGSCRKLALLNLAQNQLSGELPPQLGNLINLQVLKLQMNKLNGTIPFQIAQLHQLSTLNLSCNSLSGSIPSEMSSLSKLNFLHLQQNNLSGSIPTSIGNLKLLIELQLGGNQLSGEIPSMPLSLQASLNLSNNLFSGPIPSSFGILDSLEILDLSNNKFSGAIPDDLTKISALTQLLLYNNQLSGVIPKFDRYVHVESAGNKNLVSTPTQDNTTPNIVPRYAKKGISVAVAILIAIVAAIFLVGLVSVLVVLVSRHYYRVNDEHLQSGEDPHLPQVIQSNLLTPNGIHRSSIDFSKAMEAVAETSNVTLKTRFSTYYKAVMPSGSIYFVKKLNWTDKILPVGSHDKFGKELEVLAKLNNSNAMTPLAYVLSTDTAYILYEFVSNGSLFDVLHGSIGNSLDWASRYSIAVGVAQGLSFLHGLASSPILLLDLSSKSILLKSLKEPLVGDIEHYKVIDPSRSTGNFSAVAGSAGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDYILDFNVSRTSQAVRNQMLAILQIALVCVSTSPEARPKMKSVLRMLLNAR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3007g00001 949 Gene3D Ribonuclease Inhibitor 437 497 IPR032675 -
Gabi3007g00001 949 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 326 590 - -
Gabi3007g00001 949 SUPERFAMILY Protein kinase-like (PK-like) 687 945 IPR011009 -
Gabi3007g00001 949 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 181 274 - -
Gabi3007g00001 949 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 756 949 - -
Gabi3007g00001 949 SMART LRR_typ_2 450 474 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 308 331 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 92 115 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 286 307 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 520 544 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 354 378 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 426 449 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 165 189 IPR003591 -
Gabi3007g00001 949 SMART LRR_typ_2 237 260 IPR003591 -
Gabi3007g00001 949 SUPERFAMILY RNI-like 253 559 - -
Gabi3007g00001 949 Gene3D Transferase(Phosphotransferase) domain 1 756 949 - -
Gabi3007g00001 949 Pfam Leucine rich repeat 501 557 IPR001611 GO:0005515
Gabi3007g00001 949 Pfam Leucine rich repeat 404 463 IPR001611 GO:0005515
Gabi3007g00001 949 Pfam Leucine rich repeat N-terminal domain 49 64 IPR013210 -
Gabi3007g00001 949 PANTHER LEUCINE RICH REPEAT KINASE 2 69 207 - -
Gabi3007g00001 949 ProSiteProfiles Protein kinase domain profile. 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3007g00001 949 ProSiteProfiles Leucine-rich repeat profile. 285 307 IPR001611 GO:0005515
Gabi3007g00001 949 Gene3D Ribonuclease Inhibitor 330 436 IPR032675 -
Gabi3007g00001 949 Pfam Protein kinase domain 687 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3007g00001 949 SUPERFAMILY L domain-like 50 325 - -
Gabi3007g00001 949 Gene3D Ribonuclease Inhibitor 498 588 IPR032675 -
Gabi3007g00001 949 Gene3D Phosphorylase Kinase; domain 1 658 755 - -
Gabi3007g00001 949 PRINTS Leucine-rich repeat signature 520 533 - -
Gabi3007g00001 949 PRINTS Leucine-rich repeat signature 286 299 - -
Gabi3007g00001 949 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 30 180 - -
Gabi3007g00001 949 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 644 755 - -
Gabi3007g00001 949 Gene3D Ribonuclease Inhibitor 35 81 IPR032675 -
Gabi3007g00001 949 Gene3D Ribonuclease Inhibitor 82 329 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3007g00001 Gabi-Chr3007 8838 12653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3007g00001 144 949 Receptor kinase-like Gene Family AT2G41820 38.896 3.39e-156 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3007g00001 Pkinase 2.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3007g00001 - - gmx:100796647 1306.58