LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3002g00022	ATGAGGTTTATGAGATACATAGCACAATGGAAAAGCGCTGCGAAGGAAGCGTTGGATCGCACAGCTATCACAGCGAAGTTCCTATGCTGTCTTCACTTCACCAACAACTACCTCTGCTCCCTAACTCACGTCTATGGGCCTAGCATGCTCCCCACCCTCAATCTCGCCGGCGACGTCGTTATCGCCGAACATCTCTCTCCGCGGCTCGGGAACCTCGATCATGGAGACTTGGTTCTCGTTCGGTCCCCTTTGAACCCTAATCGGAGCTTGACGAAGCGCATTGTGGGCATGGAAGGGGACACTATCACTTACTTTGACCCTTTGCGCGCTGATTCTACTCAAACTCAAATTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATATATGCTTCCCATGATTCACGGCATTTTGGTCCTGTTCCATATGGTCTTATACAAGGGAAAGTGTTTTTCCGGGTTTGGCCTCTTGATAGCTTTGGACTGCTAGGTCAATGA	507	0.499	MRFMRYIAQWKSAAKEALDRTAITAKFLCCLHFTNNYLCSLTHVYGPSMLPTLNLAGDVVIAEHLSPRLGNLDHGDLVLVRSPLNPNRSLTKRIVGMEGDTITYFDPLRADSTQTQIAVVPKGHVWIQGDNIYASHDSRHFGPVPYGLIQGKVFFRVWPLDSFGLLGQ	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3002g00022	168	Gene3D	Umud Fragment, subunit A	35	164	-	-
	Gabi3002g00022	168	CDD	S26_SPase_I	40	153	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00022	168	FunFam	Inner membrane protease subunit 1	35	165	-	-
	Gabi3002g00022	168	Pfam	Signal peptidase, peptidase S26	29	104	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00022	168	Pfam	Signal peptidase, peptidase S26	115	158	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00022	168	SUPERFAMILY	LexA/Signal peptidase	37	166	IPR036286	-
	Gabi3002g00022	168	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00022	168	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	120	139	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00022	168	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00022	168	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	8	167	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3002g00022	Gabi-Chr3002	191141	198161	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3002g00022	49	167	MADS-box Gene Family	AT1G29960	52.500	1.62e-40	131

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3002g00022	K09647		-	cave:132173278	259.61