LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3002g00018	ATGAGTTTTGTGAGTTACATTGCACAATGGAGAAGCGTAGCGAAGAAAGTGTTGGATCGCACAGGCAAAGCCGTGAAGTTCATATCCGGTGGATATGGGGATAGCATGCTCCCCACCTTCACTTCCGGCGACGTCGTTCTCGTTGAAAAAATCTCTCCGAGAGTCGGGAACCTCCGTCATGGAGACGTGGTTTCTCTTTTGTCCCATTTGGATCCTAATAAGCACCTTGGGAAGCGCATCGTGGCCATGGAAGGGGACACTGTCACTTACTTTGATCCTTTGCACGCTGATGCTACTAAAACTGTAGTGGTGCCAAAGGGGCATGTTTGGATTGAAGGTGATAACACACGAGAATCCTTTGATTCACGGGCTTTTGGTCCTGTTCCATATGGTCTTATAAATGGAAAATATTTTTTACGGGTTTGGCCACTCAACAGCTTTGGACTGGTAGAAAAAAAAAGATATTTTAAATAA	474	0.4515	MSFVSYIAQWRSVAKKVLDRTGKAVKFISGGYGDSMLPTFTSGDVVLVEKISPRVGNLRHGDVVSLLSHLDPNKHLGKRIVAMEGDTVTYFDPLHADATKTVVVPKGHVWIEGDNTRESFDSRAFGPVPYGLINGKYFLRVWPLNSFGLVEKKRYFK	157

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3002g00018	157	ProSitePatterns	Signal peptidases I signature 3.	109	122	IPR019758	GO:0004252\|GO:0016020
	Gabi3002g00018	157	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	76	88	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00018	157	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	104	123	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00018	157	SUPERFAMILY	LexA/Signal peptidase	33	150	IPR036286	-
	Gabi3002g00018	157	Gene3D	Umud Fragment, subunit A	31	155	-	-
	Gabi3002g00018	157	CDD	S26_SPase_I	33	136	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00018	157	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	32	153	-	-
	Gabi3002g00018	157	ProSitePatterns	Signal peptidases I serine active site.	33	40	IPR019756	GO:0004252\|GO:0016020
	Gabi3002g00018	157	Pfam	Signal peptidase, peptidase S26	33	90	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00018	157	Pfam	Signal peptidase, peptidase S26	100	142	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3002g00018	Gabi-Chr3002	141710	145328	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3002g00018	36	148	MADS-box Gene Family	AT1G29960	47.826	1.06e-31	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3002g00018	K09647		-	cave:132173278	176.407