LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3002g00017	ATGAGTTTTGTGAGTTACATTGCACAATGGAGAAGCGTAGCGAAGAAAGTGTTGGATCGCACAGGCAAAGCCGTGAAGTTCATATCCGGTGTTCACTTCACTTACTACTACCTCTTCTCCCCAGGATATGGGGATAGCATGCTCCCCACCTTCACTTCCGGCGACGTCGTTCTCGTTGAAAAAATCTCTCCGAGAGTCGGGAACCTCCGTCATGGAGACGTGGTTTCTCTTTTGTCCCATTTGGATCCTAATAAGCACCTTGGGAAGCGCATCGTGGCCATGGAAGGGGACACTGTCACTTACTTTGATCCTTTGCACGCTGATGCTACTAAAACTGTAGTGGTGCCAAAGGGGCATGTTTGGATTGAAGGTGATAACACACGAGAATCCTTTGATTCACGGGCTTTTGGTCCTGTTCCATATGGTCTTATAAATGGAAAATATTTTTTACGGGTTTGGCCACTCAACAGCTTTGGACTGGTAGAAAAAAAAAGATATTTTAAATAA	507	0.4517	MSFVSYIAQWRSVAKKVLDRTGKAVKFISGVHFTYYYLFSPGYGDSMLPTFTSGDVVLVEKISPRVGNLRHGDVVSLLSHLDPNKHLGKRIVAMEGDTVTYFDPLHADATKTVVVPKGHVWIEGDNTRESFDSRAFGPVPYGLINGKYFLRVWPLNSFGLVEKKRYFK	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3002g00017	168	SUPERFAMILY	LexA/Signal peptidase	44	161	IPR036286	-
	Gabi3002g00017	168	CDD	S26_SPase_I	44	147	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00017	168	Gene3D	Umud Fragment, subunit A	37	166	-	-
	Gabi3002g00017	168	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	87	99	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00017	168	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	115	134	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Gabi3002g00017	168	ProSitePatterns	Signal peptidases I serine active site.	44	51	IPR019756	GO:0004252\|GO:0016020
	Gabi3002g00017	168	ProSitePatterns	Signal peptidases I signature 3.	120	133	IPR019758	GO:0004252\|GO:0016020
	Gabi3002g00017	168	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	164	-	-
	Gabi3002g00017	168	Pfam	Signal peptidase, peptidase S26	44	102	IPR019533	GO:0004252\|GO:0006465
	Gabi3002g00017	168	Pfam	Signal peptidase, peptidase S26	111	153	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3002g00017	Gabi-Chr3002	141710	145329	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3002g00017	47	159	MADS-box Gene Family	AT1G29960	47.826	1.37e-31	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3002g00017	K09647		-	cave:132173278	191.43