Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3002g00011 ATGAGGAATTCCCTGGTTATAGCCTTTTCCATAACCATATGCTTCATTGCTTTTGTGATATCAAAGATTTTCATCTCGGCCCTCCTCTATAAAAGATGGAGAAGAAAGCACTTGATTTATGAAGAAGGTTATCCAGGAGGGAAGATGGTAATATTTAGGTCTTCAGTGCTTAAATCTCTCGCATCTGATGTGGTCTTAAAGAAGACACAGAAGCTGAACAACAAGGACATCATTGGGTCTGGTGGTTATGGTGTAGTTTATGAACTAAAACTAAATGACTCCACAGCCTTTGCTGTGAAAAGGCTAAACCGTGGAACTGCAGACAGGGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACTCTTTATGGATATTGCACTGCCCCACACTACAATCTTCTCATATATGAGCTGATGCCCAATGGAAGTTTGGATTCCTTTTTGCATGGGAGATCAATGGACAAGAAGGTTTTGGATTGGCCAACCAGGTACAAAATAGCTTTAGGTGCTGCTAGAGGAGTATCATATCTTCACCACGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAATATATTGCTGGATCAAAATATGGAGGCCCGAGTTTCTGATTTTGGATTAGCCACGTTGATGGAACCAAATAAAACTCATGTTTCAACAGTTGTGGCTGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACAGGAAGAGCAACAGTCAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTACTGGAGCTTTTAACTGGGAAAAAACCCAGTGATGAAGCATTTATGGAAGAGGGAACCAAGCTTGTCACATGGGTGAAGGGTGTTGTTCAAGAGAAGAAGGAGGAGTTAGTTCTTGATAATAGCTTAGGGTCTTGCCCAATGCAAGAGGTCAACAAGATGTTCAACATTGCAATGATGTGCCTTGAACAAGATCCCTTGAATAGGCCAACCATGGCTGAGGTTGTCAACTTGCTTGAGCAAACAGAACCAGACAAACTTGTTTCTGCATCTTGA 1065 0.415 MRNSLVIAFSITICFIAFVISKIFISALLYKRWRRKHLIYEEGYPGGKMVIFRSSVLKSLASDVVLKKTQKLNNKDIIGSGGYGVVYELKLNDSTAFAVKRLNRGTADRDKGFERELEAMADIKHRNIVTLYGYCTAPHYNLLIYELMPNGSLDSFLHGRSMDKKVLDWPTRYKIALGAARGVSYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTVVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDEAFMEEGTKLVTWVKGVVQEKKEELVLDNSLGSCPMQEVNKMFNIAMMCLEQDPLNRPTMAEVVNLLEQTEPDKLVSAS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3002g00011 354 Pfam Protein tyrosine and serine/threonine kinase 74 342 IPR001245 GO:0004672|GO:0006468
Gabi3002g00011 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Gabi3002g00011 354 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Gabi3002g00011 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 353 - -
Gabi3002g00011 354 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Gabi3002g00011 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 346 - -
Gabi3002g00011 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Gabi3002g00011 354 SUPERFAMILY Protein kinase-like (PK-like) 55 344 IPR011009 -
Gabi3002g00011 354 Gene3D Phosphorylase Kinase; domain 1 49 147 - -
Gabi3002g00011 354 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3002g00011 354 ProSiteProfiles Protein kinase domain profile. 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3002g00011 Gabi-Chr3002 87673 89766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3002g00011 5 344 Receptor kinase-like Gene Family AT2G35620 46.939 7.57e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Gabi3002g00011 PK_Tyr_Ser-Thr 5.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3002g00011 - - ahf:112703495 594.734