Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2g00009 ATGTATTTATCAGAAAAACCTCGTCCCATCGATTTCTACAAAGAAGAAGGGACGCGAGACATGATGATCGAGGTGGTCTCGAACGGCGAGCTTCCGCCGCCGCCACAGCACCACCAGCAACCGCCGCCGATGATCCTCGGCGAGAGCAGCGGCGAGGATCCCGAGGTTGAGATAAAGGCACCGAAGAAGCGCGCGGAAACTTGGGTGCAGGACGAGACGCGAAGCCTCATTGCGCTTCGGCGCGAGATGGATGCGCTTTTTAACACTTCAAAGTCGAACAAGCACTTGTGGGAACAGATATCGGCGAAGATGAGGGAAAAAGGGTTCGATCGTTCACCAACTATGTGCACCGATAAGTGGAGGAACCTTTTGAAGGAGTTCAAGAAGGCTAAGCACCAAGATAGAGGAGGAAGTGGCTCTGCGAAGATGTCCTATTACAAAGAGATTGATGAGATTCTCAGAGAAAGAAGCAAGAGTGTGCAGTACAAAAGCCCTACTCCTACCCCTAAAGTTGATTCTTTTATGCAGTTTGCTGATAAAGGTATTGATGACACCAGCATCTCTTTTGGGCCTGTTGAAGCTACTGGAAGACCGACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCGAGTGGAGTTCCCCCTTGGAATTGGAGAGAAACTCCCGGAAATGGTGCAGAAAGCCAGTCATGTTGTGGAAGGGTTATATCAGTCAAATGGGGAGATTACACAAGACGAATTGGCATTGATGGTACTCCGGAAGCCATCAAGGAGGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTGCTTTTTGGTTGGAAGATGAAGACCTGATAATTAGAAGTATTGACCGTGACATGCCTATAGGAAATTACACTCTTCACCTCGATGAAGGAATAGCCATTAAAGTATGCCTCTATGATGAGTCTGATCATATCCCTGTGCATACTGAAGAGAAGATATTTTACACTGAAGATGATTACCGCGATTTTCTGACACGCCGGGCTTGGACATGTCTAAGGGAATTTGATGGCTATAGAAATATAGACAATATGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1140 0.4702 MYLSEKPRPIDFYKEEGTRDMMIEVVSNGELPPPPQHHQQPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIALRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKSVQYKSPTPTPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETPGNGAESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEDLIIRSIDRDMPIGNYTLHLDEGIAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLTRRAWTCLREFDGYRNIDNMDDLRPGAIYRGVS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2g00009 379 SMART sant 64 126 IPR001005 -
Gabi2g00009 379 CDD GT1 66 131 - -
Gabi2g00009 379 FunFam trihelix transcription factor GT-1 68 130 - -
Gabi2g00009 379 Pfam Myb/SANT-like DNA-binding domain 67 152 IPR044822 -
Gabi2g00009 379 PANTHER FI21293P1 37 377 - -
Gabi2g00009 379 MobiDBLite consensus disorder prediction 27 54 - -
Gabi2g00009 379 Gene3D - 68 130 - -
Gabi2g00009 379 ProSiteProfiles Myb-like domain profile. 60 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2g00009 Gabi-Chr2 48987 54723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2g00009 20 378 Trihelix Transcription Factor Family AT3G25990 71.739 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2g00009 Myb_DNA-bind_4 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2g00009 - - ccaj:109807736 733.791