Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi29g00006 ATGGCTATGTTGAATCTCAATGTTGAAGTTATCCATGCTGATGCTGACTCAACCTGTGCTCAAAAGGGGATGCAACTGCAAAATTTTCCTCCTGAAATATCAGATTCTAGGACCGCCTACTCCTCAGTTGTGAATCCTGCAGAGGAAGATTCCTCAAACAATTATTCTCCCTTCATTTTTGACATAATGAAGAAAGAAAGATATGGGATGGAATTTGATGCTACTGAAAGGGTCAAGGAAGAAAACATAGGACAAGAGCATGAGATAATCACAAGGACCCTTTTTCCTGTGACTGCTGACAGAGGAGGTAGAGTGTGTGATTTCAACAAGTTGGGGTTGTTGGGGAAGACTCAATGGCTGAACTTGTCTTTTCTTGAGCCTGAAGGACAAAATGGACTTAGAACCTTGCAGCAGAAGAAACCACAAGTTAGAAAAAGTAGGAGGGGACCAAGGTCTCGCAGCTCACAATACCGGGGTGTTACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCTAGAGCATATGATAGGGCTGCTATTAAGTTCCGTGGAGTTGATGCTGATATAAACTTCAGTTTGAGTGATTATGAGGAGGATTTAAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTCTTCATAATTCGTCGACAAATTAATGGAACCTCAAGGAGAAGATCTACATTCAAAGGTGTATTACCTCTCCACAAATATGGTCAAGGAGAATCAGGAATGGGACCGCATAAAGATTGCATTTTTACATTTTCTACATGCAGGTTTTGTCCCAAGCCACCCATCAAGTGTGATGATGGAGAAGTTGAGACATGTTTCAAGCCCTGTACCTATAAGGGAGAGAAAATTGCAAATTTAAGCAGAGCAGGTACTTGCCATAATCTTGATTTGAGCCTAGGGATTTCTCCATCTTCTAAACAATTGAAGAATTGTGATATTGGAGGAGGATTTTCCTTTGGATATGCGGCTTGTATGATACCCAAAGAAAAGGAAATAATGGAGAAGGCCATGGTAAACAGAATAGAATATGTTCCTTTGCAAAGACTTTCCAACTTGGCATGGCAACTTTGCAGCAATGGCAGCATTGCCTTAGGGCCATTGCAATCAACTACAGCATCATCAGGATTCATTTCTTCTAGTAACATCATCCATTCTTCAAATTAG 1236 0.4142 MAMLNLNVEVIHADADSTCAQKGMQLQNFPPEISDSRTAYSSVVNPAEEDSSNNYSPFIFDIMKKERYGMEFDATERVKEENIGQEHEIITRTLFPVTADRGGRVCDFNKLGLLGKTQWLNLSFLEPEGQNGLRTLQQKKPQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLSDYEEDLKQMRGLSKEEFVFIIRRQINGTSRRRSTFKGVLPLHKYGQGESGMGPHKDCIFTFSTCRFCPKPPIKCDDGEVETCFKPCTYKGEKIANLSRAGTCHNLDLSLGISPSSKQLKNCDIGGGFSFGYAACMIPKEKEIMEKAMVNRIEYVPLQRLSNLAWQLCSNGSIALGPLQSTTASSGFISSSNIIHSSN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi29g00006 411 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Gabi29g00006 411 CDD AP2 156 211 IPR001471 GO:0003700|GO:0006355
Gabi29g00006 411 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Gabi29g00006 411 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Gabi29g00006 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 324 - -
Gabi29g00006 411 MobiDBLite consensus disorder prediction 137 156 - -
Gabi29g00006 411 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Gabi29g00006 411 FunFam AP2-like ethylene-responsive transcription factor 155 214 - -
Gabi29g00006 411 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi29g00006 Gabi-Chr29 93118 96756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi29g00006 69 331 AP2-EREBP Transcription Factor Family AT4G36920 46.479 1.48e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi29g00006 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi29g00006 K09284 - gmx:100776138 531.176