Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi29g00005 ATGGCTATGTTGAATCTCAATGTTGAAGTTATCCATGCTGATGCTGACTCAACCTGTGCTCAAAAGGGGATGCAACTGCAAAATTTTCCTCCTGAAATATCAGATTCTAGGACCGCCTACTCCTCAGTTGTGAATCCTGCAGAGGAAGATTCCTCAAACAATTATTCTCCCTTCATTTTTGACATAATGAAGAAAGAAAGATATGGGATGGAATTTGATGCTACTGAAAGGGTCAAGGAAGAAAACATAGGACAAGAGCATGAGATAATCACAAGGACCCTTTTTCCTGTGACTGCTGACAGAGGAGGTAGAGTGTGTGATTTCAACAAGTTGGGGTTGTTGGGGAAGACTCAATGGCTGAACTTGTCTTTTCTTGAGCCTGAAGGACAAAATGGACTTAGAACCTTGCAGCAGAAGAAACCACAAGTTAGAAAAAGTAGGAGGGGACCAAGGTCTCGCAGCTCACAATACCGGGGTGTTACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCTAGAGCATATGATAGGGCTGCTATTAAGTTCCGTGGAGTTGATGCTGATATAAACTTCAGTTTGAGTGATTATGAGGAGGATTTAAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTCTTCATAATTCGTCGACAAATTAATGGAACCTCAAGGAGAAGATCTACATTCAAAGGTGTATTACCTCTCCACAAATATGGTCAAGGAGAATCAGGAATGGGACCGCATAAGTTTTGTCCCAAGCCACCCATCAAGTGTGATGATGGAGAAGTTGAGACATGTTTCAAGCCCTGTACCTATAAGGGAGAGAAAATTGCAAATTTAAGCAGAGCAGGTACTTGCCATAATCTTGATTTGAGCCTAGGGATTTCTCCATCTTCTAAACAATTGAAGAATTGTGATATTGGAGGAGGATTTTCCTTTGGATATGCGGCTTGTATGATACCCAAAGAAAAGGAAATAATGGAGAAGGCCATGGTAAACAGAATAGAATATGTTCCTTTGCAAAGACTTTCCAACTTGGCATGGCAACTTTGCAGCAATGGCAGCATTGCCTTAGGGCCATTGCAATCAACTACAGCATCATCAGGATTCATTTCTTCTAGTAACATCATCCATTCTTCAAATTAG 1206 0.4171 MAMLNLNVEVIHADADSTCAQKGMQLQNFPPEISDSRTAYSSVVNPAEEDSSNNYSPFIFDIMKKERYGMEFDATERVKEENIGQEHEIITRTLFPVTADRGGRVCDFNKLGLLGKTQWLNLSFLEPEGQNGLRTLQQKKPQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLSDYEEDLKQMRGLSKEEFVFIIRRQINGTSRRRSTFKGVLPLHKYGQGESGMGPHKFCPKPPIKCDDGEVETCFKPCTYKGEKIANLSRAGTCHNLDLSLGISPSSKQLKNCDIGGGFSFGYAACMIPKEKEIMEKAMVNRIEYVPLQRLSNLAWQLCSNGSIALGPLQSTTASSGFISSSNIIHSSN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi29g00005 401 CDD AP2 156 211 IPR001471 GO:0003700|GO:0006355
Gabi29g00005 401 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 266 - -
Gabi29g00005 401 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Gabi29g00005 401 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Gabi29g00005 401 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Gabi29g00005 401 MobiDBLite consensus disorder prediction 137 156 - -
Gabi29g00005 401 FunFam AP2-like ethylene-responsive transcription factor 155 214 - -
Gabi29g00005 401 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Gabi29g00005 401 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi29g00005 Gabi-Chr29 93118 96756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi29g00005 33 266 AP2-EREBP Transcription Factor Family AT2G28550 53.061 7.26e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi29g00005 AP2 2.4e-10 CL0081