Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2999g00021 ATGGCATTCTCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAACACTAAAGACTCAGAATTCCCTCTGAAGGAAATTGGAAATGAAGGTCTCACAAAAAGGATTCTCAGAAAAGGAGTCACTTGGCAGACTCCATTCTCTGGAGACGAAGTCGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCTTCGTTTCATTTCAAATTAGGCCAAAGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGTGGAAGGTTCTCCACCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTTCCATCAGGGACTTGACTGGCGATGGAGGAATCATGAAAAAGATAATAAGGGAAGGAGAAGGATGGGCTACTCCCAGAGAGGCTGATGAGGTGCTAGTGAAATATGAAGCAAGGCTAGCAAATGGAATGCACTTTCAGTCTGATCAAGGAGTGGAGTTTAATGTAAGCGATGGCTATCTTTGTCCTGCCATGAGTATAGCAGTAAAGACAATGAGAAAGGGTGAGGTGGCAGAGCTAGCTATGAAATTCTTGTATGGACTCAGTCAAAACTCAAATAGAACCACTAAGCTTGATGATTGTCTCCTACCAGATTGTAATATAACTACCATTAAACTTGAGTTGGTATCATGGAAAATTGTTACCGATGTCACGGGAGATAAGAAGATAATAAAAAAAATTAAGAAAGCCGGTGAGGGGCTTGATCGTCCTAATGAAGAATCCCAAGTGAAAGTTATATATTTGTGTAAACGAGAAGATGGTACAATTATTGAGAGGAAAGGATCAGATGAAGAACCTTTTGAGTTCACAATCCTGGAAGAACAGGTACCTGAGGGTCTAGAAAGAGCAATACTGACAATGAAAAAAGCAGAACAAGCTATGGTGACTATCAATGCTGAATATTTGTGTGACCATAATAATTCACAGGGAAACACAACAAATAATAAAGTCCTTTATTATGAAGTTGAATTGGTTGATTTCGTTAAGGAGAAGCCATTTTGGAAAATGGATACTCAAGAGAAACTAGAAGCTGGTGAGAGGAAGAAGCATGATGGAAATCTGTTGTTCAAGGCTGAAAATTTCAAGCGCGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAATGAAGATGAGAAGCGTCAGGCTAATACCTTAAGATTGTCCTGTAATTTGAACAATGCTGCATGTAAACTTAAATTGGAAGAATACACAGAAGCTACCAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATGTCAAGGCTCTATACAGAAGATGCCAGGCATACCTGAAAACATCAGAATTGGAGAAAGCTGAGGCTGACATTAGAAGAGCTCTGATTACTGATCCAAATAACAGAGAGATTAAGCTTGAATACAAAGAGCTGAAACGCAAGCAAAAGGAATACAGTAGATATGAAGCCGACATCTTCAGCACAATGCTCTCAAGGATGAAAACCTACATGGAGAAGAATCAAGCAAGGGTTGTTTTTTCCTAA 1650 0.3964 MAFSQLSHSLENELNTKDSEFPLKEIGNEGLTKRILRKGVTWQTPFSGDEVEVHFRGQVENGASLESSYDKGSSFHFKLGQSEVIKGWDEGVATMKKGERAIFKIPPNLAYGVEGSPPLIPPNATLIFDIEMLSWSSIRDLTGDGGIMKKIIREGEGWATPREADEVLVKYEARLANGMHFQSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMKFLYGLSQNSNRTTKLDDCLLPDCNITTIKLELVSWKIVTDVTGDKKIIKKIKKAGEGLDRPNEESQVKVIYLCKREDGTIIERKGSDEEPFEFTILEEQVPEGLERAILTMKKAEQAMVTINAEYLCDHNNSQGNTTNNKVLYYEVELVDFVKEKPFWKMDTQEKLEAGERKKHDGNLLFKAENFKRASKKYEKAVKYIEFDHSFNEDEKRQANTLRLSCNLNNAACKLKLEEYTEATRLCTKVLEQDPLNVKALYRRCQAYLKTSELEKAEADIRRALITDPNNREIKLEYKELKRKQKEYSRYEADIFSTMLSRMKTYMEKNQARVVFS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2999g00021 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Gabi2999g00021 549 Coils Coil 322 342 - -
Gabi2999g00021 549 Gene3D - 255 372 IPR046357 GO:0003755
Gabi2999g00021 549 SMART tpr_5 470 503 IPR019734 GO:0005515
Gabi2999g00021 549 SMART tpr_5 387 420 IPR019734 GO:0005515
Gabi2999g00021 549 SMART tpr_5 436 469 IPR019734 GO:0005515
Gabi2999g00021 549 Gene3D - 20 138 IPR046357 GO:0003755
Gabi2999g00021 549 Pfam Tetratricopeptide repeat 449 505 - -
Gabi2999g00021 549 Coils Coil 506 526 - -
Gabi2999g00021 549 SUPERFAMILY FKBP-like 26 136 - -
Gabi2999g00021 549 FunFam Peptidylprolyl isomerase 375 530 - -
Gabi2999g00021 549 ProSiteProfiles TPR repeat profile. 470 503 IPR019734 GO:0005515
Gabi2999g00021 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 160 226 IPR001179 GO:0003755
Gabi2999g00021 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 133 IPR001179 GO:0003755
Gabi2999g00021 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 279 367 IPR001179 GO:0003755
Gabi2999g00021 549 SUPERFAMILY TPR-like 377 532 IPR011990 GO:0005515
Gabi2999g00021 549 Gene3D Tetratricopeptide repeat domain 373 530 IPR011990 GO:0005515
Gabi2999g00021 549 SUPERFAMILY FKBP-like 141 219 - -
Gabi2999g00021 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 282 370 IPR001179 GO:0003755
Gabi2999g00021 549 PANTHER PEPTIDYLPROLYL ISOMERASE 23 139 - -
Gabi2999g00021 549 SUPERFAMILY FKBP-like 253 389 - -
Gabi2999g00021 549 Gene3D - 139 254 IPR046357 GO:0003755
Gabi2999g00021 549 FunFam Peptidylprolyl isomerase 3 137 - -
Gabi2999g00021 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 254 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2999g00021 Gabi-Chr2999 234037 238372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2999g00021 25 535 Calmodulin-binding Proteins AT5G48570 53.385 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2999g00021 - - gmx:100785412 917.146