Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2999g00018 ATGACTATTGGAGATGTTGAGGACAGAAAATTCAAGCGCAAGATGGAGGAGGAGCCACCTACTTTGAAGGAAGATTTGGAGCAATTACTGACGCTGAGGCTTGGCAACAACACCACGAAGGATGATTCTTCATCCAACAAGCTCATTTCCAAACCCTTGAAGGGTTCTGACGACGCAGGTTCTTCACCAAAACCTGCGGAACCAGAACCCTTGAATGATAAGGAAGCACAAGAAGAGAATGACCAACGTCAATTCTCTTGCAAATACTGCGACAAGAAGTTCCCAAGCTCTCAAGCCCTTGGTGGACACCAAAACGCTCATAGACGTGAGAGAAACATCTCAAAAATGGAAAAAGAACAAGATATGAACACCTTTGGCGGGTTTGCACCTGCAAACCCTAATCAATTACCTAATCAATTTTATCCATATTCAGGCATGGCAAATAATAATATACCCTACCAAGGGTCACACTCACCCTATTATCATGGTGCACCACAAATGCACCCACACTACCCCATGGCCCCATCAGTACCACACATGCCTAACAACATATCTTGGCCTATTAGACCAGTTGGCTATGGCAACACTAACCAAGGGCTGCATCACCAACCCTACGCTCCCCTCATCCCAACACACCGTTTTGGAATGACAAGTTCATGGGGTGAAGGTTCTGCAACAAGTTCACAGAGATTGAACCATGTGGGACTTTTCAATGGGCTCAATCGCATTCCTTCACTTGCTGAGAGTGCTGCTGCTGCTGCGGCTAAAAATTCTCGTGCTCGTGCTCGTGCTCGTGTTCGTGTTGGAGGCCTTCAGGGAAACCCTAGTGTGTCAACTCAGCTTTCATCCCCTGAGGAAATCGATTTGACCCTGAACCTTTGA 882 0.4671 MTIGDVEDRKFKRKMEEEPPTLKEDLEQLLTLRLGNNTTKDDSSSNKLISKPLKGSDDAGSSPKPAEPEPLNDKEAQEENDQRQFSCKYCDKKFPSSQALGGHQNAHRRERNISKMEKEQDMNTFGGFAPANPNQLPNQFYPYSGMANNNIPYQGSHSPYYHGAPQMHPHYPMAPSVPHMPNNISWPIRPVGYGNTNQGLHHQPYAPLIPTHRFGMTSSWGEGSATSSQRLNHVGLFNGLNRIPSLAESAAAAAAKNSRARARARVRVGGLQGNPSVSTQLSSPEEIDLTLNL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2999g00018 293 MobiDBLite consensus disorder prediction 1 84 - -
Gabi2999g00018 293 Pfam C2H2-type zinc finger 85 110 - -
Gabi2999g00018 293 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Gabi2999g00018 293 MobiDBLite consensus disorder prediction 31 51 - -
Gabi2999g00018 293 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 293 IPR044246 GO:0009788
Gabi2999g00018 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Gabi2999g00018 293 MobiDBLite consensus disorder prediction 68 84 - -
Gabi2999g00018 293 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gabi2999g00018 293 Gene3D Classic Zinc Finger 71 126 - -
Gabi2999g00018 293 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2999g00018 Gabi-Chr2999 150900 151781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2999g00018 71 123 C2H2 Transcription Factor Family AT5G01860 47.170 1.31e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2999g00018 zf-C2H2_6 3.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2999g00018 - - aprc:113874385 155.606