Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2998g00042 ATGCCTCTTTTAAGGAGAAAGCCTTTTGCCTTGGCAAAACCTCCTGAGGATTTGAAGCTGGATGAACATGTTTACCGAATTCGATTTACGAAAGAAATATTTCGAGAATATCATGATTATTTGGACCGTTTAAATCTATACCGCCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGTTTGACTTATGAGGAGGCTTTGGTGTCAGAACAACGTGCGACTGAGAAAGTTCAACAGTTTCCTAGAGAGTTAATGGCTCCTGCTTTAAGGATCATTCAGTACAGTATGCTCCCTTTGAAGGAACTTGCTGATTCTATTGCTGAAAAATTGCAGGAACGCTTGTTTGTGGGTGCTGAACTATATGGGAAAAAGGGTGATGGAGTATGCCCATGCAAAATATTAAAAGTCATCCAGGAAGGAGCTGACAAATTCTGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGTGAAAAAACACAAGTCAGTGTGGAAGATTTGGTGCAAAAGAAGCCGCTTTTTAGTAGGAATATGTTGAAGTCTTTTATTCGTGAATGTACATGTCGGAATGCCCCTTGGGTCTTACATGATGAGCTGGCACAAAGTCATGGAATATCACTTGACATTCCTAAGGAGTTAAGAGGAAGGATTTTTTTCAAAGATGGACTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGGATCAATGGAAGAAACTGATAACTGTAAAAGGGAGAAGTTGGATGCGGCACAATTTGATGGTTCTGCCCAAGAGAAAGAAAATGACCAACAAAAGGATGAACCTATTAAATATCCAATTGATGATCTATTGGTGAAGCCTAGTCCAGATGATCCTGTTTTCACTGATCTTCCTTCTCCATCAAGAGACTTCAGTGTTCCAATGGATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGAAAACTGCTGCACTTGTGGCCCTACTCTCTCGAAGATTTTGAAAATGCAGTATGCCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGGATTCTTATTAATGATGACGGTGAATACTCTTCAGCTGTAAAGAAACGAAAGCTGAAGTCTAAGATTACAATGATTAATTGGACAGAATATTTATGCGATTTTCTAGAAATGATCAACATTCCTGGTCTGAATCACTATGAAGCCACCATAAAACGGGGACATTATGGCCTTGTAGATGCCAAAGCTAAATTAGAAATCTTACGTGAATTGGTCAATCGAGCCCTTGAAACTGAAATATTCAGGGAAAAGTTGGATGAGTTTATTGAACAGCGGCGGGCACTTGGGGCCTCTAGAAGGGAAGAAGCACTGGAAGATGGTAGGAAGAGAAGAAAAGAGAAGGAGCGGTTGAAAGCTGAGTCAGAGGGCAATGGAACTGTGGATGGGTATCTTCTAAACAGTGCAAGTGTCTCAACAAACAATAATCCTAGTATACAAAATGGAGACGTGGGAAATAAAAGAAATGGAGAGATAGAATCATCTAGACAAAATGATCCATTGGGTACAAGTGGGATCAAGCATTCAAATCCAGCTTCAAAAAAGGCATCTAAGAAGCTGAAGTCAGAGCTGAAAGAACCAACGGAAAATGGAAAAGAATTATCTAGAAAGGAATTAATGAAACAGTTGAAGGGCGATAAGGATCCACCAGAGAAGAATAGTAAAGAACAGAGGAGAGAATATTTTGAACGGGAGATAGAGAAACGAATTGTTTGTAGAAGCCCATTAGGTAAGGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGTGATGGGAGGATATTTGTCGAAAGCTGTGACTCCAAGGAGTGGGGATACTACTGCAGTAAGGAAGAGCTTGATGCATTGATGGGTTCCCTCAATTGCAAGGGTGAGCGGGAAAGGGCGCTGCGGAAACAATTGGAAAAATATTATAGTACAATATGCTCAGAATTACAGAAAAGATCGAAGGATTTGATGCAGAAGATTGCAATGGATGAGTCTGTCCCTCGAAGGTCTACTCGTGTTCGAGCACCACCTAGGCAAAACCCTGCTAATGCTTACCTCAGATATGTTAACAAGTGGAAAGAATAG 2136 0.4031 MPLLRRKPFALAKPPEDLKLDEHVYRIRFTKEIFREYHDYLDRLNLYRQRVWMCKVTGKTGLTYEEALVSEQRATEKVQQFPRELMAPALRIIQYSMLPLKELADSIAEKLQERLFVGAELYGKKGDGVCPCKILKVIQEGADKFCYEVAWLDKNKNISEKTQVSVEDLVQKKPLFSRNMLKSFIRECTCRNAPWVLHDELAQSHGISLDIPKELRGRIFFKDGLLICSKKRKNEGSMEETDNCKREKLDAAQFDGSAQEKENDQQKDEPIKYPIDDLLVKPSPDDPVFTDLPSPSRDFSVPMDCVGDLLMVWDFCTSFGKLLHLWPYSLEDFENAVCHKDSNVVLLVESHAALFRILINDDGEYSSAVKKRKLKSKITMINWTEYLCDFLEMINIPGLNHYEATIKRGHYGLVDAKAKLEILRELVNRALETEIFREKLDEFIEQRRALGASRREEALEDGRKRRKEKERLKAESEGNGTVDGYLLNSASVSTNNNPSIQNGDVGNKRNGEIESSRQNDPLGTSGIKHSNPASKKASKKLKSELKEPTENGKELSRKELMKQLKGDKDPPEKNSKEQRREYFEREIEKRIVCRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYCSKEELDALMGSLNCKGERERALRKQLEKYYSTICSELQKRSKDLMQKIAMDESVPRRSTRVRAPPRQNPANAYLRYVNKWKE 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2998g00042 711 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 710 - -
Gabi2998g00042 711 Coils Coil 455 475 - -
Gabi2998g00042 711 MobiDBLite consensus disorder prediction 454 477 - -
Gabi2998g00042 711 MobiDBLite consensus disorder prediction 516 532 - -
Gabi2998g00042 711 MobiDBLite consensus disorder prediction 454 556 - -
Gabi2998g00042 711 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Gabi2998g00042 711 Pfam DDT domain 304 361 IPR018501 -
Gabi2998g00042 711 SMART testlast3 303 364 IPR018501 -
Gabi2998g00042 711 Coils Coil 413 433 - -
Gabi2998g00042 711 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Gabi2998g00042 711 MobiDBLite consensus disorder prediction 482 509 - -
Gabi2998g00042 711 MobiDBLite consensus disorder prediction 537 556 - -
Gabi2998g00042 711 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Gabi2998g00042 711 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 593 658 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2998g00042 Gabi-Chr2998 377123 384872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2998g00042 573 657 Homeobox Transcription Factor Family AT1G28420 38.298 6.67e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi2998g00042 WAC_Acf1_DNA_bd 5.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2998g00042 - - var:108323886 1083.55