Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2998g00034 ATGGGAAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGTCCAAAGAGGAAGATCAACGCCTCATCAACTACATCAAGCTTCATGGTGAAGGCTGTTGGAGATCTCTTCCGAAAGCTGCAGGCTTGCTTCGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTATCTAAGACCTGATCTCAAGAGAGGAAACTTCACTGAAGAAGAAGATGAGCTCATCATTAACCTCCATAGCTTACTTGGAAACAAATGGTCTCTGATAGCTGCGAGGTTACCAGGAAGAACCGATAATGAGATCAAGAACTACTGGAACACCCACATCAAGCGTAAACTCTATAATCGTGGAATCGACCCCCAAACCCATCGACCACTCAAGAGCATCACAACTTCCTCCACAGCCATCGTTCCCGCCACCACCACCACAGCTTCACCACCTTCTCCTGTAGCCACCACCACCACAAGCAAGAAAAGAAGTAACGATGACAGCAATAGCAGCAGCAACCACAACAACATTAACAAGAACAATGATTTTCAGTTATTTAGTGCGTATTCGGATGTAAAGGTTGTTGGTACTGATTCTTCAGGTGGTGAAGACTCTAATAGTAGCAGTGGTGTTACCACAGAGGAAGCCTATCCTCATCAACTCAACTTGGACCTTTCCTTAGGCCTCTGTTCTCAGCCCCAAGATTCTAATTTCATGAACCCAGACATGTTAAAACGACAACGACAAGAGCAACAAGAACAACAACAAGTTATGTACACGTGGTGTGGGAACATTATTAGTAGCCAAGATATGTGTCTGTGTTACAGTTTAGGGTTACAAAGTAACCAAGCTTGTAGCTGCAAAGCTATGGGTTCTGGTGCTGCTGCTACTACTACTACAGTTACTCCACCTGCCACCGATATTAAAATGTGTAGATTTTACAGAGCCAAGAATATTAATATTTAG 963 0.4372 MGRSPCCEKEHTNKGAWSKEEDQRLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYNRGIDPQTHRPLKSITTSSTAIVPATTTTASPPSPVATTTTSKKRSNDDSNSSSNHNNINKNNDFQLFSAYSDVKVVGTDSSGGEDSNSSSGVTTEEAYPHQLNLDLSLGLCSQPQDSNFMNPDMLKRQRQEQQEQQQVMYTWCGNIISSQDMCLCYSLGLQSNQACSCKAMGSGAAATTTTVTPPATDIKMCRFYRAKNINI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2998g00034 320 CDD SANT 69 112 IPR001005 -
Gabi2998g00034 320 Gene3D - 68 137 - -
Gabi2998g00034 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2998g00034 320 MobiDBLite consensus disorder prediction 198 214 - -
Gabi2998g00034 320 CDD SANT 16 61 IPR001005 -
Gabi2998g00034 320 MobiDBLite consensus disorder prediction 123 179 - -
Gabi2998g00034 320 SMART sant 13 63 IPR001005 -
Gabi2998g00034 320 SMART sant 66 114 IPR001005 -
Gabi2998g00034 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2998g00034 320 MobiDBLite consensus disorder prediction 127 179 - -
Gabi2998g00034 320 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gabi2998g00034 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2998g00034 320 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi2998g00034 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2998g00034 320 FunFam Myb transcription factor 68 137 - -
Gabi2998g00034 320 FunFam MYB-related transcription factor 13 66 - -
Gabi2998g00034 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi2998g00034 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 238 - -
Gabi2998g00034 320 Gene3D - 14 66 - -
Gabi2998g00034 320 MobiDBLite consensus disorder prediction 195 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2998g00034 Gabi-Chr2998 295921 297369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2998g00034 1 199 MYB Transcription Factor Family AT4G09460 62.557 2.49e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2998g00034 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2998g00034 K09422 - gmx:778033 408.683