Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2996g00005 ATGCTAATTTATCCAACCGGATTGATATTTGAGTCAGCATGGGAAAATTTCTTTATAAATCTTTTTACCTTCATGCTATCTGGTCATATTGTTGGGTCAAGCTGGTACCTGTTTGGTTTGCAGAGGGTTAATCAATGTCTAAGAGATGCCTGCAAGAAAGCACATATTAATGAATGTACAAAATTCATTGATTGTGGGCATGGATATACTAAAGAATATCAAAATGATACAAATTGGCCTCTTTGGAAGAACAATGCAAATGCAACTGCTTGTTTTACTGAGAATGGTTTTGAGTATGGGATCTATCTTAAAGCTGTCAATCTTACTGCAGATCACAATGTGATCACTAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACTCTGGCTGGCAATTTAACCCCTAGCTATTTTGTTTGTGAAGTCCTTTTTACCATGGCCATCATAGGAATGGGACTCTTGCTTTTTGCTCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGTCACTTAGACGACGTGATGTTGAACAATGGATGAGCCATCGGCGCTTAGCAGATGATCTGAGAAGGAGAGTAAGACAGGCTGAACGTTATAATTGGGCTGCAACAAGAGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCTGAAGACCTCCAGAGAGATATCAGACGTCATCTCTTTAAATTTGTTAAGAAAGTTCGAATTTTTGCCTTGATGGATGAGCCTATCTTGGATGCTATATGTGAGAGACTAAGACAAAAAACATATATCAAAGGAAGCAAAATTCTATATAATGGTGGTCTAGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCATTGGTGAAGATGGAATTGTTCCTTTATCTGAAGGGAATGCTTGTGGTGAAGAACTTCTTGCATGTTGTCTTGAGCATCCTTCAGTAACCAAAGATGGTGGAAAAGTAAGGATTCCAAGACACAGATTGGTTAGCAATAGGACAGTATGGTGCTTAACCAATGTGGAGGCATTTTCACTTCGAGCACAAGACCTTGAAGAAGTTACAAGCCTTTTTGCAAGATTCTTAAGGAGTCCACGTGTTCAAGGAGCCATAAGGTATGAATCCCCTTACTGGAGATGCCTTTCAGCAACACGCATCCAGGTTGCATGGAGATATAGGAAGAAACGTCTTAGTCGTGCTGATACTTCCCAGTCAAATCAAACATCATAG 1257 0.3946 MLIYPTGLIFESAWENFFINLFTFMLSGHIVGSSWYLFGLQRVNQCLRDACKKAHINECTKFIDCGHGYTKEYQNDTNWPLWKNNANATACFTENGFEYGIYLKAVNLTADHNVITRYVYSSFWGFQQISTLAGNLTPSYFVCEVLFTMAIIGMGLLLFALLIGNIQNFLQALGRRRLEMSLRRRDVEQWMSHRRLADDLRRRVRQAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYIKGSKILYNGGLVEKMVFIVRGKLESIGEDGIVPLSEGNACGEELLACCLEHPSVTKDGGKVRIPRHRLVSNRTVWCLTNVEAFSLRAQDLEEVTSLFARFLRSPRVQGAIRYESPYWRCLSATRIQVAWRYRKKRLSRADTSQSNQTS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2996g00005 418 Gene3D Helix hairpin bin 175 240 - -
Gabi2996g00005 418 Pfam Ion transport protein 10 176 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi2996g00005 418 Gene3D - 6 173 - -
Gabi2996g00005 418 SUPERFAMILY cAMP-binding domain-like 176 369 IPR018490 -
Gabi2996g00005 418 Gene3D Jelly Rolls 246 369 IPR014710 -
Gabi2996g00005 418 ProSiteProfiles cAMP/cGMP binding motif profile. 248 315 IPR000595 -
Gabi2996g00005 418 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 411 - -
Gabi2996g00005 418 CDD CAP_ED 248 363 IPR000595 -
Gabi2996g00005 418 SUPERFAMILY Voltage-gated potassium channels 10 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2996g00005 Gabi-Chr2996 28649 39288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2996g00005 5 324 Ion Channels AT3G17700 73.209 4.23e-157 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2996g00005 K05391 - gmx:100795955 687.952