Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2995g00046 ATGGAGCATCCCAATCATGCATCAGAAGGGTCATCTCAGAAGAAAACGGGAAGAGGGAAAACAGAAATCAAACGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAGCGCCGTAACGGGTTGTTGAAGAAAGCTTATGAACTTTCTGTATTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGCCGTCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATGCAGAATCTGTATCTGAAGCTAATGCACAGTTTTATCAGCAGGAATCGTCCAAATTAAAAAGACAGATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCGCTTAGCTCTCTGAGTCTGAAGGAACTAAAGAACCTTGAGAGCAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTATATGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAATCTTCTGCGAGCAAAGATAGCTGAACATGAGAGAGCAGAACAACAACAGCAACCGAATGTGATGCCGGGAAATGTTTGCGAGTCCATGCCTTCACAATCATATGACCGGAATTTATTCCCTGTTAATCTCCTAGATTCCAATAATCAATATTCACGTCAAGACCAGACTGCTCTACAATTAGTGTAA 726 0.4201 MEHPNHASEGSSQKKTGRGKTEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASSNAESVSEANAQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLYADVEFMQKREIELQNHNNLLRAKIAEHERAEQQQQPNVMPGNVCESMPSQSYDRNLFPVNLLDSNNQYSRQDQTALQLV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2995g00046 241 Coils Coil 102 125 - -
Gabi2995g00046 241 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2995g00046 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 Coils Coil 136 156 - -
Gabi2995g00046 241 Coils Coil 175 195 - -
Gabi2995g00046 241 CDD MADS_MEF2_like 17 93 IPR033896 GO:0000977|GO:0045944
Gabi2995g00046 241 SUPERFAMILY SRF-like 17 91 IPR036879 GO:0003677|GO:0046983
Gabi2995g00046 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2995g00046 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 Gene3D - 28 98 IPR036879 GO:0003677|GO:0046983
Gabi2995g00046 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Gabi2995g00046 241 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2995g00046 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 193 - -
Gabi2995g00046 241 FunFam agamous-like MADS-box protein AGL11 28 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2995g00046 Gabi-Chr2995 314304 320300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2995g00046 1 241 MADS-box Gene Family AT3G58780 68.145 1.02e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2995g00046 K-box 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2995g00046 K09264 - gmx:100792224 396.741