Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2995g00023 ATGGACAAACATTCTTGGGATTCTATGCCAACTCATGGTGCTACAGGTCCATCTGAGGTTTTCTCGCTTGATGTTGCTAAAAAAGCGGGAAGCAGTACATGGGGGATACCACAGTGGAATGATGCATTTCGTGCTTCAAGTGATGCTAGCTTATTTTGTAGTTCACTTCCTGTTCTTCCACTTGAAAAACTAACTTTTACTGATTCAGAGCCTTATGGTCATTCTGTTGATGATAACTTGCCGGTATTAGACAAAGTTCACATAGAGGATGAGGGACAAGATCCACTTGAAAATATTGAAATCAATGAAATTGGAAACACGCTTCCTGATGATGAAGATGAGCTATTAGCTGGGATAATGGATGATTTTGACTTGAGTATGTTGCCCAACCTACTGGAGGATCTGGATGAACATGATCTTTTTGGCAGTGGAGGGGGTTTTGAAATGGATTTCGAACCCCAAGAAAGCCTCAGTATTGGTATATCAAAGATAAGCTTGTCTGATGAATTTCATTCAAGTAGTATTGGTCATTATGCAATCCCAAATGGCATAGGAACAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGCGGAACATCAACAGTAATGTCGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGAGATATCAGAACATTGTACACTGCATGTAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTATTCAATTTGGATCAATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGTTTACGGAGAGGTCAAAGAGATCAGGGAAACGCCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCTCTGAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGATCACGTCGAAACTTGATGCACCAACTGAGTCAAGAGCTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTGGGTTCACCTATTGGCAATTCTCCTCCTGGTAACTGGGCACAATTTGGTAGTCCAGTTGAACATAACCCATTAGGTTCTTTTGGCAAATCCCCTGTTTTGAATTTTGCCAACCCTATGAATACCAACCATTTGCCTGGATTGGCTGCAATTCTTTCCCCTCATTTATCAACTTCTCCAAAGATTGCACCAATTGCCAAGAACCCTGGAAGGGCTAATAATGCAAATCAGATATTTGCAAGCTCTGGATCGACACAAGGAGCAGCTTTTCAGCATTCTATATCTTTTCCTGAACAAAAAATAAATGCAAATCCTAGGCCTATATCTACTTTTGGTGAATCAGATTCAAGTTCGTCAAGTATTGGAACAATGTCTGGCACTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCAGAGCATTCAAACACATCTGACTGGTCTTCATCTCCTGTTCGGCTTCCATTTAATTCTGGTGGACAAAGGCAGGGTTTCCCATATACTGGTAGGCACAGTTCTTTTCTTGGTTCTCACCCCCATCATCGTGTAGGATCTGCTCCAACTGGCCTTCCTCTTGATAGGCATTTTAGTTACTTTCCAGAGTCACCTGAAACTTCTCTCAAGAGCTCGGATGTGTTTGCGAGTATGAATCACAATGATGAGAAATTTTTTATGAACATGGGTGCTCGTGCATCTCTAGGTGTTGGTATTGGCCTTCCAAGAAATACGACTGAAATGAGTTCACCTAATTTCAGAATGATGTCACTACCTAGGCATGGTTCCTTGTTCCTTGGAAATGGTTTGTATTCTGGACCAGGAGCAATTAACATTGAGGGATTAGCTGAATATGGTCGAAGTAGGCGACCTGACAATAGTGGGAACCAAATTGATAGCAAGAAGCAATACCTGCTTGATCTGGACAAAATTATGAATGTGGAAGACATAAGGACTACTTTGATGATTAAAAACATTCCTAACAAGTACACTTCAGAGATGCTGCTTGCTGCAATTGATGAGAATCACAGCGGTAGTTATGACTTTCTCTACTTACCAATTGACTTTAAGAACAAGTGTAACGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAAAAGTTTAATAGTGAAAAAGTTGCTTCCCTGGCATATGCACGGATCCAGGGAAAGGGTGCACTTGTGACACATTTTCAAAATTCAAGCCTAATGAGTGAGGATAAGCGGTGTCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTTTCAAGCAATTTGAATGTATGCATTCGTCAACCAGATGGTTCTTACTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATGTGGAAGAAAAGATAGAGAAAGATTAA 2577 0.4125 MDKHSWDSMPTHGATGPSEVFSLDVAKKAGSSTWGIPQWNDAFRASSDASLFCSSLPVLPLEKLTFTDSEPYGHSVDDNLPVLDKVHIEDEGQDPLENIEINEIGNTLPDDEDELLAGIMDDFDLSMLPNLLEDLDEHDLFGSGGGFEMDFEPQESLSIGISKISLSDEFHSSSIGHYAIPNGIGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDQSVSNDDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGSRRNLMHQLSQELEQDEARTFRHQVGSPIGNSPPGNWAQFGSPVEHNPLGSFGKSPVLNFANPMNTNHLPGLAAILSPHLSTSPKIAPIAKNPGRANNANQIFASSGSTQGAAFQHSISFPEQKINANPRPISTFGESDSSSSSIGTMSGTQFLWGSPTPYSEHSNTSDWSSSPVRLPFNSGGQRQGFPYTGRHSSFLGSHPHHRVGSAPTGLPLDRHFSYFPESPETSLKSSDVFASMNHNDEKFFMNMGARASLGVGIGLPRNTTEMSSPNFRMMSLPRHGSLFLGNGLYSGPGAINIEGLAEYGRSRRPDNSGNQIDSKKQYLLDLDKIMNVEDIRTTLMIKNIPNKYTSEMLLAAIDENHSGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMSEDKRCRPILFHSEGQEIGDQEHFLSSNLNVCIRQPDGSYSGDLLESPKGNVEEKIEKD 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2995g00023 858 CDD RRM1_MEI2_like 198 274 IPR034453 -
Gabi2995g00023 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 185 816 - -
Gabi2995g00023 858 MobiDBLite consensus disorder prediction 481 552 - -
Gabi2995g00023 858 Gene3D - 188 282 IPR012677 -
Gabi2995g00023 858 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Gabi2995g00023 858 SUPERFAMILY RNA-binding domain, RBD 700 784 IPR035979 GO:0003676
Gabi2995g00023 858 Gene3D - 283 380 IPR012677 -
Gabi2995g00023 858 CDD RRM3_MEI2_like 701 786 IPR034454 -
Gabi2995g00023 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Gabi2995g00023 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Gabi2995g00023 858 FunFam Protein MEI2-like 1 283 378 - -
Gabi2995g00023 858 Pfam RNA recognition motif 2 698 794 IPR007201 -
Gabi2995g00023 858 CDD RRM2_MEI2_like 283 353 - -
Gabi2995g00023 858 MobiDBLite consensus disorder prediction 481 553 - -
Gabi2995g00023 858 SMART rrm1_1 200 268 IPR000504 GO:0003723
Gabi2995g00023 858 SMART rrm1_1 700 776 IPR000504 GO:0003723
Gabi2995g00023 858 SMART rrm1_1 285 353 IPR000504 GO:0003723
Gabi2995g00023 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Gabi2995g00023 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Gabi2995g00023 858 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2995g00023 Gabi-Chr2995 171927 184383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2995g00023 139 392 Eukaryotic Initiation Factors Gene Family AT1G71770 24.296 4.70e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2995g00023 - - gmx:100812324 1389.79