LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2995g00022	ATGGACAAACATTCTTGGGATTCTATGCCAACTCATGGTGCTACAGGTCCATCTGAGGTTTTCTCGCTTGATGTTGCTAAAAAAGCGGGAAGCAGTACATGGGGGATACCACAGTGGAATGATGCATTTCGTGCTTCAAGTGATGCTAGCTTATTTTGTAGTTCACTTCCTGTTCTTCCACTTGAAAAACTAACTTTTACTGATTCAGAGCCTTATGGTCATTCTGTTGATGATAACTTGCCGGTATTAGACAAAGTTCACATAGAGGATGAGGGACAAGATCCACTTGAAAATATTGAAATCAATGAAATTGGAAACACGCTTCCTGATGATGAAGATGAGCTATTAGCTGGGATAATGGATGATTTTGACTTGAGTATGTTGCCCAACCTACTGGAGGATCTGGATGAACATGATCTTTTTGGCAGTGGAGGGGGTTTTGAAATGGATTTCGAACCCCAAGAAAGCCTCAGTATTGGTATATCAAAGATAAGCTTGTCTGATGAATTTCATTCAAGTAGTATTGGTCATTATGCAATCCCAAATGGCATAGGAACAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGCGGAACATCAACAGTAATGTCGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGAGATATCAGAACATTGTACACTGCATGTAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTATTCAATTTGGATCAATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGTTTACGGAGAGGTCAAAGAGATCAGGGAAACGCCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCTCTGAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGATCACGTCGAAACTTGATGCACCAACTGAGTCAAGAGCTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTGGGTTCACCTATTGGCAATTCTCCTCCTGGTAACTGGGCACAATTTGGTAGTCCAGTTGAACATAACCCATTAGGTTCTTTTGGCAAATCCCCTGTTTTGAATTTTGCCAACCCTATGAATACCAACCATTTGCCTGGATTGGCTGCAATTCTTTCCCCTCATTTATCAACTTCTCCAAAGATTGCACCAATTGCCAAGAACCCTGGAAGGGCTAATAATGCAAATCAGATATTTGCAAGCTCTGGATCGACACAAGGAGCAGCTTTTCAGCATTCTATATCTTTTCCTGAACAAAAAATAAATGCAAATCCTAGGCCTATATCTACTTTTGGTGAATCAGATTCAAGTTCGTCAAGTATTGGAACAATGTCTGGCACTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCAGAGCATTCAAACACATCTGACTGGTCTTCATCTCCTGTTCGGCTTCCATTTAATTCTGGTGGACAAAGGCAGGGTTTCCCATATACTGGTAGGCACAGTTCTTTTCTTGGTTCTCACCCCCATCATCGTGTAGGATCTGCTCCAACTGGCCTTCCTCTTGATAGGCATTTTAGTTACTTTCCAGAGTCACCTGAAACTTCTCTCAAGAGCTCGGATGTGTTTGCGAGTATGAATCACAATGATGAGAAATTTTTTATGAACATGGGTGCTCGTGCATCTCTAGGTGTTGGTATTGGCCTTCCAAGAAATACGACTGAAATGAGTTCACCTAATTTCAGAATGATGTCACTACCTAGGCATGGTTCCTTGTTCCTTGGAAATGGTTTGTATTCTGGACCAGGAGCAATTAACATTGAGGGATTAGCTGAATATGGTCGAAGTAGGCGACCTGACAATAGTGGGAACCAAATTGATAGCAAGAAGCAATACCTGCTTGATCTGGACAAAATTATGAATGTGGAAGACATAAGGACTACTTTGATGATTAAAAACATTCCTAACAAGTACACTTCAGAGATGCTGCTTGCTGCAATTGATGAGAATCACAGCGGTAGTTATGACTTTCTCTACTTACCAATTGACTTTAAGAACAAGTGTAACGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGAACATTTCCTTTCAAGCAATTTGAATGTATGCATTCGTCAACCAGATGGTTCTTACTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATGTGGAAGAAAAGATAGAGAAAGATTAA	2397	0.4101	MDKHSWDSMPTHGATGPSEVFSLDVAKKAGSSTWGIPQWNDAFRASSDASLFCSSLPVLPLEKLTFTDSEPYGHSVDDNLPVLDKVHIEDEGQDPLENIEINEIGNTLPDDEDELLAGIMDDFDLSMLPNLLEDLDEHDLFGSGGGFEMDFEPQESLSIGISKISLSDEFHSSSIGHYAIPNGIGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDQSVSNDDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGSRRNLMHQLSQELEQDEARTFRHQVGSPIGNSPPGNWAQFGSPVEHNPLGSFGKSPVLNFANPMNTNHLPGLAAILSPHLSTSPKIAPIAKNPGRANNANQIFASSGSTQGAAFQHSISFPEQKINANPRPISTFGESDSSSSSIGTMSGTQFLWGSPTPYSEHSNTSDWSSSPVRLPFNSGGQRQGFPYTGRHSSFLGSHPHHRVGSAPTGLPLDRHFSYFPESPETSLKSSDVFASMNHNDEKFFMNMGARASLGVGIGLPRNTTEMSSPNFRMMSLPRHGSLFLGNGLYSGPGAINIEGLAEYGRSRRPDNSGNQIDSKKQYLLDLDKIMNVEDIRTTLMIKNIPNKYTSEMLLAAIDENHSGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKEHFLSSNLNVCIRQPDGSYSGDLLESPKGNVEEKIEKD	798

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2995g00022	798	SUPERFAMILY	RNA-binding domain, RBD	700	761	IPR035979	GO:0003676
	Gabi2995g00022	798	SUPERFAMILY	RNA-binding domain, RBD	196	359	IPR035979	GO:0003676
	Gabi2995g00022	798	CDD	RRM1_MEI2_like	198	274	IPR034453	-
	Gabi2995g00022	798	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	185	767	-	-
	Gabi2995g00022	798	MobiDBLite	consensus disorder prediction	481	552	-	-
	Gabi2995g00022	798	Gene3D	-	188	282	IPR012677	-
	Gabi2995g00022	798	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	286	351	IPR000504	GO:0003723
	Gabi2995g00022	798	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	201	265	IPR000504	GO:0003723
	Gabi2995g00022	798	FunFam	MEI2-like protein 5 isoform 2	188	282	-	-
	Gabi2995g00022	798	SMART	rrm1_1	700	771	IPR000504	GO:0003723
	Gabi2995g00022	798	SMART	rrm1_1	200	268	IPR000504	GO:0003723
	Gabi2995g00022	798	SMART	rrm1_1	285	353	IPR000504	GO:0003723
	Gabi2995g00022	798	Gene3D	-	283	380	IPR012677	-
	Gabi2995g00022	798	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	284	357	IPR000504	GO:0003723
	Gabi2995g00022	798	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	199	272	IPR000504	GO:0003723
	Gabi2995g00022	798	CDD	RRM2_MEI2_like	283	353	-	-
	Gabi2995g00022	798	MobiDBLite	consensus disorder prediction	481	553	-	-
	Gabi2995g00022	798	Pfam	RNA recognition motif 2	698	761	IPR007201	-
	Gabi2995g00022	798	FunFam	Protein MEI2-like 1	283	378	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2995g00022	Gabi-Chr2995	171927	184383	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2995g00022	194	370	Eukaryotic Initiation Factors Gene Family	AT3G16380	24.747	1.48e-10	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2995g00022	-		-	gmx:100812324	1238.4