Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2995g00002 ATGTATTCATATGAGTTTCACCAGTACCAGGTGGTGGGGAGAGCTCTTCCGACCGAAACCGATGAGCACCCGAAGATCTACCGAATGAAACTGTGGGCTACCAATGAGGTTCGTGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAGTTAAAGAAGGTCAAGAAAAGCAATGGTCAAGTGCTAGCCATCAATGAGATTTTTGAGAAAAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGAGATACAACTCTAAATGGAGGAGTTGAGCAAATGTACAATGAAATGGCATCTCGTCATAGGGTCAGGTTGCCATGCATCCAGATAATTAAGACAGCCACCATCCCTGCTAAGCTGTGCAAAAGGGAGAACACCAAGCAGTTCCACAACTCCAAAATCAAGTTCCCTTTGGTGTTCAAAATGGTTAGGCCCCCCACTAGGAAGCTCAAGACAACATACAAGGCATCCAGACCCAACCTGTTTATGTGA 537 0.4339 MYSYEFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYNEMASRHRVRLPCIQIIKTATIPAKLCKRENTKQFHNSKIKFPLVFKMVRPPTRKLKTTYKASRPNLFM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2995g00002 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Gabi2995g00002 178 FunFam 60S ribosomal protein L18a 72 147 - -
Gabi2995g00002 178 Gene3D - 72 147 - -
Gabi2995g00002 178 FunFam 60S ribosomal protein L18a 2 71 - -
Gabi2995g00002 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gabi2995g00002 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Gabi2995g00002 178 SUPERFAMILY RplX-like 71 146 - -
Gabi2995g00002 178 Gene3D - 1 71 - -
Gabi2995g00002 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 4 177 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2995g00002 Gabi-Chr2995 5919 10742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2995g00002 1 178 Cytoplasmic Ribosomal Protein Gene Family AT3G14600 89.326 3.17e-120 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2995g00002 K02882 K22683 qsa:O6P43_012955 353.599