Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2993g00016 ATGGGTGAGAAAGCCAAGAAGGAAAGGTCTGACATTGACAGAAGCAATTTGGGAAGTAGTTTTGAGCTGAAGCCAAATGAAGGAAAGAAAAACAAGCACAAGGATAGAAAGAAAATGCACGTTACTGATAAAATACTCAATTCAAATGAAACCCTAGAGGAAAATTGTACTGCTGAAGCAGCTGACAAACAAACTTGCTCTACTGAAGGTAATATTACATTCATGTTGGATAGGGAAGAAGAGAGCCACATCAATAAGAGAAAGAAGATAAAGGGGAGAAAAGATATTAAAGTAATGAATAGTGATCTTGCTGATGATAAAGAAATGCAGTACTTTGACGACAACCAGCAAAGCAAGATGAAGAAAAGAAAAAGTTATGATGATTCAACTGGAATTGCAGAAATGGGTTTTTCAAAATCAAGCAAAAAAGGAAAAATGTCAGAGGATAAAGAGTTCAAGAATAATAAAGGTGATCTTCCTTTGGATAAAATCAACAAAGGAAATGCTAATGCACATTCTCTTGTCACCGAAGATGATTTGCTAGGTAAGAAGATGGAGAAGAAGAAGAAGAAACTGGGGAACAAAAGTAAAATGACAGTAAGAGGATATAAAAGCAATGAAGCTGATTATTCTGTTGTCAGTGAAGAGGGGCATGGCAAAAAGAAGAAGATGGAGAAGATATCGGGTAAGAAAAACAAAAGAACTGAAGATGAAGAGTATAAAATCAACAGTGATCCACCTTTTGTCAACAGCAAAAAAGGTGATCAACATTTGGTCAAAAGCCATGAAGGTGAAGATGATGACCAAGACAAGAAGTTGAAGGAGAAGAAAAAAAAGAAGATACTGAGTGAAGAAAGCAAACATGTGGAGTATAACGAGTTTACAAGCAATGAGGGCAAAGACGATGACCAAGGCAAGAAAATGAAGAAGAAACTGAATGACAAAAGCAAAAGTAAAGGGAACAGTGAATTTAAAACCAATGAAGGAGATGCTAATGCAAGTTGCATTGTCACTGAAGTTGATGATCAATGCAAGAAGAAGATAAAGAAAAAAACCAAGGCTGGTACTGGTGAATCTCCTAACCCTGTACCTGGTGGAACATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTAGAGTTTTGTTGTGATGACTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATAAGAAGATTAAAGAGGCTGTTTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGATTCTCCATTCCAGATCTCATCCTGAACTTAGAGGTTGTTGGAAAGATATTGGGTCAGTCTTACCTGAGAGGCCTTACATTAGTGTGTATTATCGTGCTCATATTTTGTTTGAAAGGGATGAGAAGCGTAAGTGGACGCCTGAAGAACTTGAATTTGTTCGTAAGGTCCAAGAACAGCATGGATCTGATTGGAAATCAGTAGCTGAAGCATTGGGTAAACATCGATTTCATGTAAAGGATGCATGGCGTAGAATAAAATTAACCAATACAAACAAAGGACGATGGTCCCAAGAGGAGTATCAAAATTTATTTGATTTAGTAAACCTGGATCTACGCGCGAGGGCTTTAGAAGATCATAGAAAATCAAAACATGGAATGTTGCGAGATAATATTAGTTGGGAGGCAATTGGCAACAAATTGACCACTAGAACCAGTCCACGTTGCTGCAAAAAATGGTATGAGCAATTAACATCATCAATGGTTGCTAAGGGTGAATGGAGTGACACCGATGACTACCGCCTAGTAAATGCTTTATTTACTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACTATCTGCTTGATCATAGGTCTGGTGATGTATGTAGAAAACGATGGAGCCAAATGGTCCAATATATTGGAGAGCATGGGAGGAAATCATTTGCCGAGCAGGTGGAAATTCTTGCAAAGAGATTTTGTCCCGACTTATTGGAAGCAAGAGAAGCCTTTGACAGCAAACCTGTGGTTTGTTGA 2016 0.3829 MGEKAKKERSDIDRSNLGSSFELKPNEGKKNKHKDRKKMHVTDKILNSNETLEENCTAEAADKQTCSTEGNITFMLDREEESHINKRKKIKGRKDIKVMNSDLADDKEMQYFDDNQQSKMKKRKSYDDSTGIAEMGFSKSSKKGKMSEDKEFKNNKGDLPLDKINKGNANAHSLVTEDDLLGKKMEKKKKKLGNKSKMTVRGYKSNEADYSVVSEEGHGKKKKMEKISGKKNKRTEDEEYKINSDPPFVNSKKGDQHLVKSHEGEDDDQDKKLKEKKKKKILSEESKHVEYNEFTSNEGKDDDQGKKMKKKLNDKSKSKGNSEFKTNEGDANASCIVTEVDDQCKKKIKKKTKAGTGESPNPVPGGTSKPKRVTFSDQVEFCCDDLVRGKRFTPEEDKKIKEAVFDYIESHGLGDEGLDMILHSRSHPELRGCWKDIGSVLPERPYISVYYRAHILFERDEKRKWTPEELEFVRKVQEQHGSDWKSVAEALGKHRFHVKDAWRRIKLTNTNKGRWSQEEYQNLFDLVNLDLRARALEDHRKSKHGMLRDNISWEAIGNKLTTRTSPRCCKKWYEQLTSSMVAKGEWSDTDDYRLVNALFTLDACCMEEVDWDYLLDHRSGDVCRKRWSQMVQYIGEHGRKSFAEQVEILAKRFCPDLLEAREAFDSKPVVC 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2993g00016 671 ProSiteProfiles Myb-like domain profile. 457 506 IPR001005 -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 1 15 - -
Gabi2993g00016 671 Pfam Myb-like DNA-binding domain 465 523 - -
Gabi2993g00016 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 462 510 IPR017930 -
Gabi2993g00016 671 SUPERFAMILY Homeodomain-like 462 523 IPR009057 -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 255 324 - -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 107 328 - -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 141 160 - -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 211 243 - -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 349 371 - -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 1 46 - -
Gabi2993g00016 671 MobiDBLite consensus disorder prediction 107 129 - -
Gabi2993g00016 671 ProSiteProfiles Myb-like domain profile. 578 631 IPR001005 -
Gabi2993g00016 671 SUPERFAMILY Homeodomain-like 556 634 IPR009057 -
Gabi2993g00016 671 PANTHER GB|AAC33480.1 22 670 - -
Gabi2993g00016 671 Gene3D - 466 504 - -
Gabi2993g00016 671 Gene3D - 505 581 - -
Gabi2993g00016 671 CDD SANT 464 493 IPR001005 -
Gabi2993g00016 671 SMART sant 461 508 IPR001005 -
Gabi2993g00016 671 SMART sant 582 633 IPR001005 -
Gabi2993g00016 671 SMART sant 511 578 IPR001005 -
Gabi2993g00016 671 SMART sant 388 459 IPR001005 -
Gabi2993g00016 671 ProSiteProfiles Myb-like domain profile. 507 576 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2993g00016 Gabi-Chr2993 377670 380651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2993g00016 434 633 MYB-Related Transcription Factor Family AT3G18100 25.121 4.36e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2993g00016 Myb_DNA-bind_6 6.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2993g00016 - - gsj:114382741 679.478