Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2993g00006 ATGGCAAGTGAGTTTGAGGAATCAGCGACAACAACAAAAGCTTCTCTTGGAAGCCCAACTTGGTCGGGTAATAGTTCTAACGAGGTCGGTGATTTTGAATGTAATATTTGTTTTGATTTGGCTCAAGACCCAGTGGTTACACTGTGTGGTCATCTATTTTGTTGGCCATGCCTCTACAAGTGGCTCCATCATCATTCACATTCTCAAGAGTGCCCTGTATGTAAGGCCCTCGTTCAGGAGGAGAAGGTTGTTCCCCTTTATGGGAGAGGGAAAGCACAAACTGATCCCAGGACTAAGTCATATCCTGGATTGGAGATTCCTCACAGGCCCATGGGTCAGAGGCCCCAAACGGATCATCTCGAGCCCAATTCATTTGGGAATTTTGGGTTTGGATTGACAGGGGAATTCATACCCATGGCTGCTACAACCTTTGAGTTTGGTGGCTTTAGACTTTCCACTGCTAACATTGAATTCCATCCGTTTCATGGTGCAACTGTGTATGGAAATGGAACCACCTCTGGTTATCCCTTCGGGTTTGATTCATTGACCGGTCGAGAACAACATATTGATCGGGACTATGTTTTGAAGAATCTGCTATTGTTGATTGGTGTGCTTGTTCTTTTCACAGTCATTTTTGGGTGGTAA 645 0.4496 MASEFEESATTTKASLGSPTWSGNSSNEVGDFECNICFDLAQDPVVTLCGHLFCWPCLYKWLHHHSHSQECPVCKALVQEEKVVPLYGRGKAQTDPRTKSYPGLEIPHRPMGQRPQTDHLEPNSFGNFGFGLTGEFIPMAATTFEFGGFRLSTAXNIEFHPFHGATVYGNGTTSGYPFGFDSLTGREQHIDRDYVLKNLLLLIGVLVLFTVIFGW 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2993g00006 215 SMART ring_2 34 74 IPR001841 -
Gabi2993g00006 215 MobiDBLite consensus disorder prediction 97 118 - -
Gabi2993g00006 215 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 18 88 - -
Gabi2993g00006 215 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2993g00006 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 209 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi2993g00006 215 CDD RING-HC_AtRMA-like 32 76 - -
Gabi2993g00006 215 SUPERFAMILY RING/U-box 30 87 - -
Gabi2993g00006 215 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Gabi2993g00006 215 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Gabi2993g00006 215 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Gabi2993g00006 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2993g00006 Gabi-Chr2993 127259 128599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2993g00006 22 213 C3H Transcription Factor Family AT2G23780 53.488 7.42e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2993g00006 K10666 - gmx:100814783 288.885