Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi298g00005 ATGGTTGAACGAAAGCAGTTCAAGACGAGGTTATGTGTGCTCTATCAGAGAGGACGCTGTACGCGCCAAAATTGCTCCTTCGCACATGGGAATGCCGAGCTTAGACGATTCCCTGCCTCATATAATGGTAGGAGAGACTATTTAGGTAATGACTTGAGGGATAAACTTGAGAGAAGGCATTTATCACCTCGAAGGTACTCACCAGCTCAAGATGCAAGGAGCCGCCAGACCACTCGTGAATTCAGTCCCTCAAGATCTTTGGAGAAAAAAAGTGACAGAAGACATAGGAGAAAGCAGGGCATTACTCGCCAAAGTGATATTTCTGGAAGTTTGAAAGCCTCAGATAGAATTCAAGATCAAGTTAAAGAAGGAAAATTGCTTTCCTCTGGTTCTAGAAATACTCTTGAAGAGCAGCTGAAGAAAGTACATTCAGATATCAACACTCTTGAGAACCGAAAATTCCAACTAGCAGTCTACCTAGATGAGAGTGTTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAACTTGAGGCTCAATTGTGCAAAGAGAATGAGGAGTGTAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTAGAGAACACAATCATAACTCACAGTTACAAGATGAACTGAAGAGGTCACAGGTCCGACTCCAAAGGTTTGGAGATCAGCTTGTCTCGGACATTTCTAGAATTGGTGCCAATGAAGAAGATTTAAGCATTGATATTGTCAGCAATGGTGAGAATACTGGTCTTCCTGCAATCATCAAACATAATGTGGAGCAGAATGATGTATCTCCCCACATGAAAAGACTGCATGTTGAACAAGATGCTGTAGAAGAGTTGAAACAAGATAGATTGAAAGATGGGCATTTTGTTGAGACAGCAAGAACCAGAAAACGTTCTCGTTGGAATTTGGATGCTGAATTGAATGACAGGGGTAACGAGGGTTTTGAGGCCCCAAACAACGGAACTGAAGTTAATAGGCCCCCAGATCTTGAAGGCAAGCACAAGAGAGGAAAATGGAATTCTTTTAACAATTTTGGTTCAGAAAAGTTGAAGGAACCCAGGATTGAAGTACCATCAACCAGCATGGCAGCTCATGTGGTTGATGAGGAAGTTGAGATTGAACTTGATGATGGAACTGATATCAATGAAACTGCAAACACAGTGAATGAGAATGGGGTGGCATTTGAAGTGAAGGGCGTATCGCTTATGTTTCCCCCAGCTTTGATTCCTCGTACCAATTATTCACAGTATGAGGGAAACGACGAGCAAGTGGATGTGGGTGTGGATGGTCGTGATGAAGAGGCAGCGGGGGCACATGTGGATATAGTTTAA 1344 0.4234 MVERKQFKTRLCVLYQRGRCTRQNCSFAHGNAELRRFPASYNGRRDYLGNDLRDKLERRHLSPRRYSPAQDARSRQTTREFSPSRSLEKKSDRRHRRKQGITRQSDISGSLKASDRIQDQVKEGKLLSSGSRNTLEEQLKKVHSDINTLENRKFQLAVYLDESVQEVDSLNSRIQELEAQLCKENEECKRITSRIRKFVREHNHNSQLQDELKRSQVRLQRFGDQLVSDISRIGANEEDLSIDIVSNGENTGLPAIIKHNVEQNDVSPHMKRLHVEQDAVEELKQDRLKDGHFVETARTRKRSRWNLDAELNDRGNEGFEAPNNGTEVNRPPDLEGKHKRGKWNSFNNFGSEKLKEPRIEVPSTSMAAHVVDEEVEIELDDGTDINETANTVNENGVAFEVKGVSLMFPPALIPRTNYSQYEGNDEQVDVGVDGRDEEAAGAHVDIV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi298g00005 447 MobiDBLite consensus disorder prediction 54 115 - -
Gabi298g00005 447 MobiDBLite consensus disorder prediction 313 344 - -
Gabi298g00005 447 SUPERFAMILY Troponin coil-coiled subunits 127 195 IPR038077 -
Gabi298g00005 447 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 431 IPR045868 GO:0046872
Gabi298g00005 447 Coils Coil 160 187 - -
Gabi298g00005 447 Coils Coil 132 152 - -
Gabi298g00005 447 Gene3D - 1 36 - -
Gabi298g00005 447 Coils Coil 205 225 - -
Gabi298g00005 447 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi298g00005 Gabi-Chr298 128097 140171 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi298g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi298g00005 - - gmx:100811131 651.744