Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2989g00003 ATGGCGTTTGATCAAAATTCCGTTCCCAACGATATGCGGCCACTGAACTCGACCCGAAATCTAGCTGAAGAGCCAGTCGTTTTGCCGCCTGTGAGTACAACGGTTCGGGAGCATGGAACCCCTGGCGCTATGCCCCTTTTCTACCCTGCTTCTGTCTCTGATGCTGGTTTGGTTGGAATGGGGTATGGAAATGTGGCTTCGGGTGCTGCTGCTGCTGCTGCTACAACCAGGTGCGTTCGCCCTGCTGTGCCGATTCCCCATCCCACCGTGAACCCTGCTATTGGGTTTAGTCATGCTTCTAATATTCCCAATGCTGTTGATCTTTCGGGTAGCTTTGTGGCAGCTGCAAATGGATATCCTATGAATTCGGGAAATTGGGTTGGGGGTAATGGGTTGGATAATGCCCTTCAGGGAAACAGCAGGGTCATTGGCAATGCCAGTGATCATGTTGGTGGTGTTGGGTTAACTGGGATTGGTTTGAGTCCTACTACAAGTCAGCGGGCTGATCAGGTGTGTGATGCCGGCGGGGATGATTCCTTGTCGGGGCGAAAATTGAAGTTTATGTGCAGTTATGGTGGGAAGATTATGCCTAGGCCAAGTGACGGAATGTTGAGATATGTTGGAGGGGAGACGAGGATCATAAGTGTTAGGAAAGATGTGAGGTTTAATGATTTGGTGCAAAAGATGGCTGATACTTTTGGGCAACCTGTGGTTATCAAGTATCAGCTCCCTGATGAGGATCTTGACGCACTGGTCTCGGTTTCCTGCCCCGATGATCTGGAGAATATGATGGAGGAGTATGAAAGATTAACTGAGAGATCTCCTGATTGTTCTGCTAAATTGAGGGTCTTTCTGTTTTCAGCTTCAGAACCTGATCCTTCTTATGTGGCACCCTTTGTGGATTTACAAAGTAGTAGGCAAAAATATGTTGAAGCGGTGAATGGAATTACTGATGGTATTAGTGGTAAACTCATAAGGAAAGAGAGTATTACAAGTGCAGCTTCTACCCAAAATTCTGATTTGAGTGGAATAGAGGTTCTTGATAGCTCAAATGCTGCTCAAGGGGATGTCAACGGGGCACCTTCTTCTGCCTCTTTATCAACTGAAGCGAATGTGGCTGCTTCTCATGATGCTACTGCAAATTTTGCAGTTTCTGAGCAGCCCAGTGCATCAATTTACTCAGATGCTTCTGCGGTTTCAGTGGGCATGCCTGTGACTAATTCTGGTCCAACTCAGACTCCACCTTTCCAGAATGAGGTTGAGTTAGAAAAGTCTGAACCTATGACTTTGTCCCAGCAGCAATTTGGGAAGCAGCAATCTGGAATTGAAATTACATCACCTGCACCTTATTTGCAGCCTTTTGTTGATCCTCGCCAGGAAGTTATGAAACATGCAGATTATGTCCAGATGCATACACATATGGGATTTCCCAATCCTCAGCTTTTAGGTAAGCCTGGGTCTATCTACTCCCGACATCAGTTTCATGATAATACTCCTTGCTTAGTGTCCCATCAGGTAATGCCTGCAATACAAATGACAGTGACTCAGCCATCTTCTCATGCTGGTGGAAGAGCGAGTGTTATTCAACCACAACCATTCATGCTGCCACAGCAAAACCGTTTGGACCAATATATTGATGAAAATACTTCAGGGCTAAGGATTCACCAGCTTCCTACTGAACAAAGTTACAATGCATATCCGGTTCAAGTCCCTTCTGTTGTAGTTGGAGGTAATTATGGCTGGGTTCAGGCTCCTCCACCAGAGAATGTTAGTTTCCCTGATGCATTATTACCTCAACAACCAGTAATGATCCCTAAGAAAGTCCAGAGAGTGGAGGACTGTTATATGTGTCGGAAAAAACTGCCTCATGTACATTCAGATCCAGTGGTTCAGGATCAGCCTAATAGTTGTGCTGGTCCATATACTGATTCAATTCCAAGTTACCATAGTCTCCCTATGGAGGAAAATTTTAGAGCTCAAGCAACAAATAGGGTTTTGGTGACTGCACCAATGAAGGACGGCAATGTTGAACAAGCAGTTGGGACCAGACCCAGGGTCTTTAGTAAATTGGAACCTCCGGGTGGATTACCATGTACTGACACAACTGGATTTTCTCTGGAGCCTGAAGGTGAGAGAATTTTTACACAAAAGCTTGACGATTCGGTTGATCCCAGGAAAGCAGTTATCCAAGAAGCAGTTGGAAGAACAGTTGAGAAACAGCGACCGAGTGATGGGTTGACGGGAACAGCACCACTGTCTTATCTAGATGATGTCGTCTGCCAGCATATTGTGCCAGTTGAAAACTGGGCTAAAGAGGATGTGCTTGTGAATAAACCTGTTAATGATGATATACCTTTGGTTGGTAGCACATCTATTGAAACTTCTGAGTGTATGGTTCAAGAATCTCCAAATGAACTTGTTAGCACTATTTCAAAAGCAGATGCTGTGGAGAATTGGATTGCACAGGACCATCTCAAACCTATTGATGGAAGGATGGACACCCTCAAGATAGGCAATCCTGAATTTTATGTAAATAATGATAAATTTGATTGCAACACTCAGCATGCTGTAGAAAAAAAAGGGATGATTCTGGATAACAACTTTGGCAGGTCAAAATTGATTGCTGATGCAAATCAAAATAAGATGATGGATGTGCTTCCCAGTTCTACTATGGAAATTTCATATGGGAATAATTCCAGGCCAGTGGAATATAATGAGGTTGTCCAACCCCCTGTTTGGGGGGGCATTCTTGGATCAAATCCTCAATCAAAGAGTGGAAACCATCTCATGGATGATGCAGTTTTGTCTTCAATTTCACCATCTGTCAGGTTTGCAGATGTGCAAGATTCTTCAAACTCACTTTTTAGCAATCAGGATCCCTGGAATATACATGGCACTTACTTTCCACCACCTAGACCTAACAAAGTGGCATTGAAGAAAGAAACCTATTCTTATAAAGATCAGTTTGGTGAGAATCCAGGCAACAACAGGGAACAAAATTTAGAAGCTCAATTGGACGATGGCCTCTACCAGACATTCAAACAGAATTTAACTTTAGATGAAGCTCAATCTGTCAAGGGCTTATCAGAAGACCGACAACTTCAAGCTGTTGCTGAAGGTTTAGCTGCTTCTGTTCTGGACTCAAGCACTTCTTCGAATCCTGAATTGCATGCCAGAGATGTGTCCCATCGTGAAGACATTGACGATGGAGATATTCAAAATGATATAACAAATATACAGTGTGTTGATAAAACTCAGGATGTTAAAAGCAAGCTCCCAGAGAAGGCAAATTTTGGCTTTCCAGTTTCAAATGTTGGAGCGTTGCAGGTTATAAAGAATTGTGACCTTGAAGAGCTGAAAGAATTGGGTTCTGGGACCTTTGGGACTGTATATCATGGAAAATGGAGGGGTACTGATGTTGCAATAAAGCGGATTAATGATAGGTGTTTTGCTGGAAAGCCTTCAGAGCAAGAACGCTTGAGAGCTGATTTTTGGAATGAGGCAATTAATCTTGCTGACTTGCATCATCCAAATGTGGTAGCTTTCTATGGTGTTGTACTTGATGGCCCTGGAGGTTCTGTGGCTACAGTAACAGAGTATATGGTTAATGGTTCTCTACGAATTGCCTTGCAGAAGAATGGGAGGAACCTTGACAAGCGCAAGCGTCTTTTGATTGCAATGGATGTGGCTTTTGGTATGGAGTATCTGCATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTGAATCTTCGAGATCCACACCGCCCAATATGCAAGATCTGCAATATTTTACCTATAGTGACTATAGGAGTTACACAAATCCAAAGATAA 3846 0.4353 MAFDQNSVPNDMRPLNSTRNLAEEPVVLPPVSTTVREHGTPGAMPLFYPASVSDAGLVGMGYGNVASGAAAAAATTRCVRPAVPIPHPTVNPAIGFSHASNIPNAVDLSGSFVAAANGYPMNSGNWVGGNGLDNALQGNSRVIGNASDHVGGVGLTGIGLSPTTSQRADQVCDAGGDDSLSGRKLKFMCSYGGKIMPRPSDGMLRYVGGETRIISVRKDVRFNDLVQKMADTFGQPVVIKYQLPDEDLDALVSVSCPDDLENMMEEYERLTERSPDCSAKLRVFLFSASEPDPSYVAPFVDLQSSRQKYVEAVNGITDGISGKLIRKESITSAASTQNSDLSGIEVLDSSNAAQGDVNGAPSSASLSTEANVAASHDATANFAVSEQPSASIYSDASAVSVGMPVTNSGPTQTPPFQNEVELEKSEPMTLSQQQFGKQQSGIEITSPAPYLQPFVDPRQEVMKHADYVQMHTHMGFPNPQLLGKPGSIYSRHQFHDNTPCLVSHQVMPAIQMTVTQPSSHAGGRASVIQPQPFMLPQQNRLDQYIDENTSGLRIHQLPTEQSYNAYPVQVPSVVVGGNYGWVQAPPPENVSFPDALLPQQPVMIPKKVQRVEDCYMCRKKLPHVHSDPVVQDQPNSCAGPYTDSIPSYHSLPMEENFRAQATNRVLVTAPMKDGNVEQAVGTRPRVFSKLEPPGGLPCTDTTGFSLEPEGERIFTQKLDDSVDPRKAVIQEAVGRTVEKQRPSDGLTGTAPLSYLDDVVCQHIVPVENWAKEDVLVNKPVNDDIPLVGSTSIETSECMVQESPNELVSTISKADAVENWIAQDHLKPIDGRMDTLKIGNPEFYVNNDKFDCNTQHAVEKKGMILDNNFGRSKLIADANQNKMMDVLPSSTMEISYGNNSRPVEYNEVVQPPVWGGILGSNPQSKSGNHLMDDAVLSSISPSVRFADVQDSSNSLFSNQDPWNIHGTYFPPPRPNKVALKKETYSYKDQFGENPGNNREQNLEAQLDDGLYQTFKQNLTLDEAQSVKGLSEDRQLQAVAEGLAASVLDSSTSSNPELHARDVSHREDIDDGDIQNDITNIQCVDKTQDVKSKLPEKANFGFPVSNVGALQVIKNCDLEELKELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERLRADFWNEAINLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRIALQKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKICNILPIVTIGVTQIQR 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2989g00003 1281 SUPERFAMILY Protein kinase-like (PK-like) 1107 1266 IPR011009 -
Gabi2989g00003 1281 CDD PB1_UP2 188 286 - -
Gabi2989g00003 1281 ProSiteProfiles Protein kinase domain profile. 1116 1281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2989g00003 1281 Gene3D Phosphorylase Kinase; domain 1 1110 1197 - -
Gabi2989g00003 1281 Pfam Protein tyrosine and serine/threonine kinase 1117 1266 IPR001245 GO:0004672|GO:0006468
Gabi2989g00003 1281 SUPERFAMILY CAD & PB1 domains 200 291 - -
Gabi2989g00003 1281 PANTHER OS05G0427100 PROTEIN-RELATED 181 482 - -
Gabi2989g00003 1281 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1109 1203 - -
Gabi2989g00003 1281 Gene3D Transferase(Phosphotransferase) domain 1 1198 1268 - -
Gabi2989g00003 1281 Gene3D - 205 288 - -
Gabi2989g00003 1281 Pfam PB1 domain 204 287 IPR000270 GO:0005515
Gabi2989g00003 1281 ProSitePatterns Protein kinases ATP-binding region signature. 1122 1153 IPR017441 GO:0005524
Gabi2989g00003 1281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1241 1253 IPR008271 GO:0004672|GO:0006468
Gabi2989g00003 1281 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 204 288 - -
Gabi2989g00003 1281 SMART PB1_new 199 288 IPR000270 GO:0005515
Gabi2989g00003 1281 ProSiteProfiles PB1 domain profile. 184 288 IPR000270 GO:0005515
Gabi2989g00003 1281 SMART serkin_6 1116 1281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2989g00003 Gabi-Chr2989 12133 18155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2989g00003 183 632 MAP Kinase Kinase Kinase AT3G46920 40.000 4.03e-80 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gabi2989g00003 PK_Tyr_Ser-Thr 5.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2989g00003 - - gmx:100776264 1781.92