Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2987g00040 ATGTCAGAAAACATGTATCCTAGGTGGTTTTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATTCAGCAAAAAGATGGTTACTTGAGCTACCCACCACCGGTTTTGTCTTCATCTTCATCCCCATACCCTGGTGCTGGTTTTCACAAGGAACCAATGTCTTCTTCTTCAACAACACCACCACCTTCATCATCTAGTACTAGGATTAGTCCAGCTGTTCTTTTCATTATAGTGATTCTTGCTGTTCTGTTTTTCATTTCTGGTCTCCTCCACCTGCTTGTTAGATTTCTCATGAAGCACCCATCTTCTTCTGCATCTGCTCAATCTAATAGACACCATGAAATTTCTACCTCTGATGCTCTCCAAAGACAGCTGCAACAGCTCTTCCATCTCCATGACTCAGGTCTGGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCTGTACAAAGAGATTGTGGGTCTGAAAGAGCCATTTGATTGTGCTGTTTGCCTGTGTGAGTTTTCTGAAAAGGATAAGCTGAGGTTGCTACCTATGTGCAGCCATGCTTTTCATATCAGTTGTATAGACACTTGGCTTTTGTCAAACTCCACATGCCCCCTTTGTAGAGGAACCCTCCTTACTCCTGAATTTTCTGTTGAAAACCCGATATTTGATTTTGATGATCTGAGGGAAGATGATGGATGCCCATGTAATGTGGAAAATGGATTCACTACTAGACAAAAAACAGTTATGGTTGAAGACACTGTAGATAAAGGAGTTGTCCCTGTGAGGCTTGGTAAATTCAAAAAGCTGAATGTGGAGGATGTGGAGATTGGAGTAGGAGAAACAAGTAGCAGTAATTTGGATGCAAGAAGATGTTACTCATTGGGATCTTACCAGTATGTGGTTGGCAATTCAGACCTCAGGGTAACCTTGAACCATGACCACAAAGATCACAATACAAGGCTCACTAAAGAAACTGAACATGGCGAGAAGCTTTCACTGGAGGGGGATATGGAAGCAAAGAAGATTAGAAGTGTGAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGCTGTGGCCGAAGAAGGGAAAATTTTCTAGCTCTTTGGAGGCTCAAATTGGCATGCCATCTTACCTTAATACAGATTTGCAAGGGAAGAGGGGAACAGAAGGGGCATGA 1176 0.4226 MSENMYPRWFFDHTHLKMAWIQHQIQQKDGYLSYPPPVLSSSSSPYPGAGFHKEPMSSSSTTPPPSSSSTRISPAVLFIIVILAVLFFISGLLHLLVRFLMKHPSSSASAQSNRHHEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPEFSVENPIFDFDDLREDDGCPCNVENGFTTRQKTVMVEDTVDKGVVPVRLGKFKKLNVEDVEIGVGETSSSNLDARRCYSLGSYQYVVGNSDLRVTLNHDHKDHNTRLTKETEHGEKLSLEGDMEAKKIRSVSKGDSFSVSKIWLWPKKGKFSSSLEAQIGMPSYLNTDLQGKRGTEGA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2987g00040 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 211 IPR013083 -
Gabi2987g00040 391 FunFam RING-H2 finger protein ATL46 126 211 - -
Gabi2987g00040 391 SUPERFAMILY RING/U-box 143 212 - -
Gabi2987g00040 391 CDD RING-H2_EL5-like 163 206 - -
Gabi2987g00040 391 Pfam Ring finger domain 163 206 IPR001841 -
Gabi2987g00040 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 67 356 - -
Gabi2987g00040 391 SMART ring_2 164 205 IPR001841 -
Gabi2987g00040 391 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2987g00040 Gabi-Chr2987 382050 384024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2987g00040 66 363 C3H Transcription Factor Family AT2G18650 42.771 7.34e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2987g00040 - - gmx:100806337 558.14