Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2987g00029 ATGTCGCAAGGTTACGCAATTGAGCTGTATTTGGACCCTGCGCTAGAAAACCAGGTTTTGAAAGCATGGAACGTTCTTGCTCGGAGACAAATCAGCACACAGTTGATCGAAATGGAATCACGACCTCACATCACACTCTTCTCCACACCATTCATCGACCCTTCAAAGCTTGAGTCACTGGTCAAGACCTTCGCTTCAAAGCAAGAGCCTTTGCCTCTCTCATTCTCTTCAATTGGTACACTCCCTAATGACAACAACATCCTCTTCCTCTCACCAACACCTTCAGTGTCATTGCTTCAGTTTCAGTCACAGCTCTGTGATGCTATCAAGAAGGAAGGCATTGACATTGGTGAAGACTATGCATTCAATTGTTGGATCCCTTATTGTTCCGTTGCTCATCATGTTCCCAAAGCGAGGATGGCTGAGGCTTTCTCTGTCTTAAGGGACTTGAAATTGCCTGTTAATGGTTATGCTACTGACATTGGCCTTGTTGAGTTTTCCCCAGTTCGTGAGCTCTTCTCCTTTGTGCTTGGCAACAATGTAGAACCATGA 552 0.4529 MSQGYAIELYLDPALENQVLKAWNVLARRQISTQLIEMESRPHITLFSTPFIDPSKLESLVKTFASKQEPLPLSFSSIGTLPNDNNILFLSPTPSVSLLQFQSQLCDAIKKEGIDIGEDYAFNCWIPYCSVAHHVPKARMAEAFSVLRDLKLPVNGYATDIGLVEFSPVRELFSFVLGNNVEP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2987g00029 183 Gene3D Cyclic phosphodiesterase 4 179 - -
Gabi2987g00029 183 PANTHER - 1 181 - -
Gabi2987g00029 183 Pfam 2'-5' RNA ligase superfamily 41 164 - -
Gabi2987g00029 183 SUPERFAMILY LigT-like 4 166 IPR009097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2987g00029 Gabi-Chr2987 246304 247684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2987g00029 1 182 Calmodulin-binding Proteins AT5G40190 73.077 8.35e-94 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2987g00029 - - cave:132181051 315.849