Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2987g00027 ATGCATGGGTTCGGTGGTGAGGAGTGGAAACAGAGCCGGCACATGTGGCCTGTACCTGACAACGCGACCACTGTAGCGCCCGATTCTTCACCGTCTGAATTTATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCTGGATTCCCCTCCTTTTATAGGAATAATTCGCAAGTTAACCTTTGATAAAGAAGAAAGTCCAATTTTAGAAGTTAATTGGCTTTACCGACCTGCTGATTTGAAGCTTGCTAAAGGGATTGTAGCTGCCCCAAACGAAGTCTTCTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTATTGCATCCGTGTAAAGTCGCATTTCTTCATAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTGTATGACATTGACCACAATTGTTTATGGTGGCTAACTGATAAGGACTACATTAATGAACGACAGGAAGAAGTTGACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCAGTGCAGTCAGGAGGCCGTTCTCCAAAACCATTGAATGGTCCAACATCAACAACACAGTCATTGAAATCTGGTTCTGATAACGTTCAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGAAAAAAGAGAGAGCGGGGTGATCAGGGGTCTGATTCATCTAAAAAAGAGCGGTTATTTAAGGTAGAAGGTGGAGATTCTGGTCAATTTAAACTGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATTACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAGATTGGTACAGCTCATGCAACCTGAAAGTGCTGATAAAAAAATAGATTTGGCTGGGCGAATAATGCTTGTTGATGTAATAGCACTTACGGAACGGGATGAATGTCTTGGATGGTTTGTCCAGCTCAGGGGTTTGCCTGTGTTGGATGAATGGCTTCAGGAGGTCCATAAGGGCAAAATTGGCGATGGTAATATGCCTAAAGAAAGTGATAAGTCTGTTGAAGAATTTTTGTTAGCTTTACTTCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTACAATCCTGTAATGTTGGAAAATCTGTTAATCATTTACGCACCCACAAAAATTCTGATATTCAGAAGAAAGCTAGGGGTTTAGTAGACACATGGAAGAGACGCGTGGAGCATGAAATGAATATGACTGATTCAAAATCTGGTTCAACCCGTGCTGTTTCTTGGCCCGCAAAACCAGCTTCTGATGTTTCTCACCTTGGAAATAGGAAAACAGGAGGGTCCTCTGAGAGTGTTGCAAAGAGCTCTGCAATTCAATCCTCAGCGTCTAAAACTTCCCAAGCTAAGCTTAATCCTGGAGAAGCACTGACCAAGTCCTCTTCATCACCTGGCCCAATTAAATCAATGACTACCACAGGGAACAGTAACTCAAAAGATCAAAACATTAAAGTCTTGGTTGGAGCTTCTACGTCAGATCTTCCATTGACTCCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAACAACAGCTTATCTTGTTCTAGTGAACATGCAAAAACTTTTGGTTCTTGTAGGGAAGATGCAAAGAGCTCTACTGCTGTGTCGATGACTGTGAGCAAAATCACTGGTAGTGCATCTCGAACTCGGAAGTCAAGCAATGGTCTTCATGGGGCTAGCATTACTGTGGTTCAGAAGGAACATGGCTCTGCAAAAAATTCAACTAGAAATTCACCTTCCGATAAAGTTTCACCATCTCAGTTGTCCCAAGAAAAATCGCCTGATCGGGCCCTTACCGATCAAGGGAATAATCAGCGACTGATTCTCAGGTTACCAAATACGGGTCGCAGTCCTTCAAGGGGAGCTAGCGGGTCCTCTTTTGAAGAGTCTGCCATTCCATGCGGGAAGGCTTCACCTTCTGCTGACAAGAATGAGAATCAGGACAGAAGAGTGAAAGCTAAATCTGATTGTTTGCAGACTCATGTTGCGTCAAATATAGTAAATGATGCATGCGATGCAAATGAAAATTTGTCGGGTTGTGATGAAGGTAAGGGCTCTCCTATTGGTGATGAGCGGTGCAGGGCTAATGAAGATGGTGATAAAGTTGCAGAAGCATTGAAACCAACTAGTTCTCCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGTGCCTCTGTGTCCCCTGGAGATGATGGGATGAACCTACTTGCTACTGTGGCTGCAGGAGAAATATCCAGATCTGGAAATGTCTCTCCTCTGGCTTCACCAGAGAGGAAGTCTTCCACTGCAGATGAATCAAGATCAGGCAACGATGGCAAGTTAAAACATTTTTCTGAAGCAGCTGTTCACTCTGTCGCACAATCTGACGATGGGGCTATTGCAGAGCATCCTTTGAGTACTGTTGATCCATTGCAATTCAAGAATGATTCAAGGCATCCTATCGCGACAATATCACATGATTTCTCTGGAGATGGTGAAGGCATTTCATCCAGTTGTATAGATAAAGCTGGTGATGGCAGAACTCAAATGAATTTCTCCGCTACGGATTTGTTGCAGAATGCTGAAGGTCCATGCTTATGGCCTGAAACTAGAGAGGATGCTTCTGAATCTATATTGCCTTCTATGAAGGAGAGTCATGTAGAATCTGGAGGAGCGAACCTTTTCCATGAGCAAACGGAATTGGGAAGTCAATGGGCTAAAGGCAGTTGTTCAGACTCTAAATTAAAGCCAAGGACTTCCTCTTTGGATGATGATCAGAAGGCTGAACACATAGATGAGGGAATTACGGATAAAGAGAAAATGTCGGTTTCGAAAGATGTTGCAAGTGTAAAGATCCAAAAGGAAGTAGGTGAAAAATCAACTGAGTTATCTTCGGTGGTAGGTAATGAGAACCAGATTAATGAAGAGAAAGTGTCAGGTCCTGGTATATCAGTGCAAAAGGCCTCTTCAGTTGCAGAAAACTGCGAGTCTACAGATATAAAAAAGGAGGATGTGACATCACCTGCTTCTGGTAATGCTTTGATGGTATCCAAGAATGAGAAGGCTGATGACATGAACTTAGTTGAGATTGAGCCTGATGAAAAACGAATGGATCTGGATTCGGCAGTTTCAGATGGTGTTAGTGAATGTGTTGAAGAGAATTTGGGTAAAAAAGAGGCTATTTGTCCCTGTTCTGGCTCATCATTTCAACCAGAGTTGCCAACATTTCCTGGGAAAGAGAATGCAGTGCCTAAAACATCTGATTGTAACCTAGATGGAATTGAATCTGAGGTTGCAGAAGAGCGGCATGCATGCCTTGCGGCTGGGTCCGATGCAGCAGTAAAACTGGACTTTGATTTAAATGAGGGCTTTCCTCCTGTTGATGATGTAAGCCAAGGGGAGATTGTTAGACAGGTAGACCCTATCACATCATCTGGAGTTCATGTTCCTTGTCCATTGCCTTTTCCCATTTCCTCCATCTCTAGTGGCTTCCATGCTTCAATTACAGTGGCATCCGCTGCCAAAGGGCCGGTTGTTCCCCCAGAAAACCCATTGCGTAGCAAGGGGGAACTTGGATGGAAAGGGTCAGCTGCTACAAGTGCATTTCGGCCAGCTGAACCTAGGAAAAATGCTGAGACACCATCAAATACTAGTGATATTCCTTCTGTTGATGCCACTTCTATCAAGCAAGGCCGCCCTCCTTTAGATTTTGATTTGAATGTGGCAGATGAAAGAAGTTTTGAAGATGTAGTTTCCCGTGGTCCTTTAGAATCTGCACCACCTGATCGTGGCACTGTGGGGCTAGATCTTGATTTAAACAGAGTTGATGAGACTCTTGAAGCCGGGTCTTTCTCTATGTGCAAAGTGGATTTTCCTTCATTATCAAGTAAGCCTTCATTGTCCAGTGGGTTATCTAATGGTGGAAGTGTCTCGAGAGACTTTGATTTGAATAATGGACCTGGCATTGATGAAATTGGAACTGAAGTCCCACTGCGTAGTCAGCAGATGAAAAGTGCGGTACCATATCCATCTGCTGTTCATGGCACAAGAACAAATAATGCTGAATTTGGAAATTATTCTTCATGGTTTCCTCCAGGCAATTCTTATTCTGCAATTACTGTCCCGCCACTTCTGCCTGGTAGGGGGGAGCAGAGTTATGTTGCTGGTGCCGGGGCACAGCGGATCATGGGTCCTGCTGGTAGCTCACCGTTTGGTCCTGAAATCTACAGGGGCCCAGTGCTTTCATCCTCTCCAGCTGTTGCTTATCCACCTACTACACCCTTTCCATATCCAGGATTTCCATTTGACACCAATTTTCCATTATCTTCAAACTCCTTTTCTGGTTGTTCAACAGCATTTATGGATTCGTCAGCTGTGGGTGGGCTTTGCTTTCCTACCATGCCCTCACAGGCAGTTGGGCCTGGTGGTGTTGTCTCATCAACATATCCTCGTCCCTATCTTATGAATCTTCAAGGCAGTACAAGTAATGTGATGCCTGACAGCAGAAAATGGGGAAGTCAAAGCCTGGATCTGAATTCAGGCCCTGGTGGTACAGATACAGAGCGGAGAGATGATAGATTACCTTCAGGATTGAGGCAAATGTCTGTCCCCAATTCACAAGCCTTGATGGAGGAACACTTGAAGATGTTTCAGGTGGCAGGTGCATTGAAGAGAAAGGAACCTGATGGTGGTTGGGATGGAGCCGATAGATTCAGTTACAAGCAACCCTCATGGCAATAG 4827 0.4409 MHGFGGEEWKQSRHMWPVPDNATTVAPDSSPSEFICKDGRKIRVGDCALFKPPLDSPPFIGIIRKLTFDKEESPILEVNWLYRPADLKLAKGIVAAPNEVFYSFHKDETPAASLLHPCKVAFLHKGVELPSGISAFVCRRVYDIDHNCLWWLTDKDYINERQEEVDQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTTQSLKSGSDNVQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKVEGGDSGQFKLESMLKSEIAKITDKGGLVDFEGVERLVQLMQPESADKKIDLAGRIMLVDVIALTERDECLGWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKESDKSVEEFLLALLRALDKLPVNLHALQSCNVGKSVNHLRTHKNSDIQKKARGLVDTWKRRVEHEMNMTDSKSGSTRAVSWPAKPASDVSHLGNRKTGGSSESVAKSSAIQSSASKTSQAKLNPGEALTKSSSSPGPIKSMTTTGNSNSKDQNIKVLVGASTSDLPLTPIKEERSSSSSQSQNNSLSCSSEHAKTFGSCREDAKSSTAVSMTVSKITGSASRTRKSSNGLHGASITVVQKEHGSAKNSTRNSPSDKVSPSQLSQEKSPDRALTDQGNNQRLILRLPNTGRSPSRGASGSSFEESAIPCGKASPSADKNENQDRRVKAKSDCLQTHVASNIVNDACDANENLSGCDEGKGSPIGDERCRANEDGDKVAEALKPTSSPSGFVSRSGQTYDASLSPMNALVESCVKFSEASASVSPGDDGMNLLATVAAGEISRSGNVSPLASPERKSSTADESRSGNDGKLKHFSEAAVHSVAQSDDGAIAEHPLSTVDPLQFKNDSRHPIATISHDFSGDGEGISSSCIDKAGDGRTQMNFSATDLLQNAEGPCLWPETREDASESILPSMKESHVESGGANLFHEQTELGSQWAKGSCSDSKLKPRTSSLDDDQKAEHIDEGITDKEKMSVSKDVASVKIQKEVGEKSTELSSVVGNENQINEEKVSGPGISVQKASSVAENCESTDIKKEDVTSPASGNALMVSKNEKADDMNLVEIEPDEKRMDLDSAVSDGVSECVEENLGKKEAICPCSGSSFQPELPTFPGKENAVPKTSDCNLDGIESEVAEERHACLAAGSDAAVKLDFDLNEGFPPVDDVSQGEIVRQVDPITSSGVHVPCPLPFPISSISSGFHASITVASAAKGPVVPPENPLRSKGELGWKGSAATSAFRPAEPRKNAETPSNTSDIPSVDATSIKQGRPPLDFDLNVADERSFEDVVSRGPLESAPPDRGTVGLDLDLNRVDETLEAGSFSMCKVDFPSLSSKPSLSSGLSNGGSVSRDFDLNNGPGIDEIGTEVPLRSQQMKSAVPYPSAVHGTRTNNAEFGNYSSWFPPGNSYSAITVPPLLPGRGEQSYVAGAGAQRIMGPAGSSPFGPEIYRGPVLSSSPAVAYPPTTPFPYPGFPFDTNFPLSSNSFSGCSTAFMDSSAVGGLCFPTMPSQAVGPGGVVSSTYPRPYLMNLQGSTSNVMPDSRKWGSQSLDLNSGPGGTDTERRDDRLPSGLRQMSVPNSQALMEEHLKMFQVAGALKRKEPDGGWDGADRFSYKQPSWQ 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 506 664 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 406 493 - -
Gabi2987g00027 1608 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1608 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1324 1343 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1522 1544 - -
Gabi2987g00027 1608 Pfam BAH domain 41 143 IPR001025 GO:0003682
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 187 216 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 935 955 - -
Gabi2987g00027 1608 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 273 408 IPR035441 -
Gabi2987g00027 1608 SMART BAH_4 40 153 IPR001025 GO:0003682
Gabi2987g00027 1608 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 416 IPR035441 -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 177 238 - -
Gabi2987g00027 1608 CDD TFIIS_I 328 404 - -
Gabi2987g00027 1608 Gene3D - 24 246 IPR043151 -
Gabi2987g00027 1608 ProSiteProfiles TFIIS N-terminal domain profile. 320 406 IPR017923 -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1239 1254 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1522 1561 - -
Gabi2987g00027 1608 SMART TFS2_5 326 405 IPR003617 GO:0005634
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 217 238 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 783 809 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 434 493 - -
Gabi2987g00027 1608 ProSiteProfiles BAH domain profile. 40 153 IPR001025 GO:0003682
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1324 1342 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 509 641 - -
Gabi2987g00027 1608 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1587 1608 - -
Gabi2987g00027 1608 MobiDBLite consensus disorder prediction 1204 1266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2987g00027 Gabi-Chr2987 224255 232291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2987g00027 273 401 Homeobox Transcription Factor Family AT4G02560 26.923 4.94e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi2987g00027 BAH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2987g00027 - - gmx:112998769 2405.17