Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2986g00027 ATGTCTGACGAAGAACATCACTTTGAGTCGAAGGCTGATGCCGGTGCATCCAAGACTTATCCACAGCAAGCTGGAACCATCCGCAAAAATGGTTACATTGTCATCAAGAACAGGCCCTGCAAGGTTGTGGAGGTTTCAACTTCTAAAACTGGAAAGCATGGACACGCAAAGTGTCACTTTGTTGGTATTGACATCTTCACCGGCAAAAAGCTTGAAGATATTGTTCCATCTTCCCATAACTGTGATGTCCCTCATGTCAATCGCGTTGATTACCAGCTCATTGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGATAATGGTGGTACTAAGGATGACCTTAGGCTTCCAACTGATGATAATCTGCTTTCGCAGGTTAGTTTGTTTATCAAGGATGGATTTGGTGAGGGTAAAGATCTGGTCGTGTCTGTTATGTCTGCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA 492 0.4472 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGGTKDDLRLPTDDNLLSQVSLFIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2986g00027 163 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Gabi2986g00027 163 Gene3D - 86 162 IPR012340 -
Gabi2986g00027 163 Gene3D - 1 85 IPR014722 -
Gabi2986g00027 163 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi2986g00027 163 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Gabi2986g00027 163 NCBIfam translation initiation factor IF-5A 17 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi2986g00027 163 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2986g00027 163 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 158 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi2986g00027 163 FunFam Eukaryotic translation initiation factor 5A 86 162 - -
Gabi2986g00027 163 CDD S1_eIF5A 86 160 - -
Gabi2986g00027 163 SMART eIF_5a_2 85 158 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi2986g00027 163 PIRSF Transl_init_eIF5A 1 161 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi2986g00027 163 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 161 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi2986g00027 163 SUPERFAMILY Nucleic acid-binding proteins 86 160 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2986g00027 Gabi-Chr2986 265053 266892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2986g00027 1 163 Eukaryotic Initiation Factors Gene Family AT1G13950 88.344 1.99e-102 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2986g00027 K03263 K02180 pvy:116115236 314.309