Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi297g00002 ATGAGGTGGATCACTCTCAACCCACGAGTCAGCTTGATCACGCCTCTTCCACTACATTCATTTCTGCTCAAACACAAGAAACAGAGGGCTGAGCCAAGAAAATCCAAGAAAAGACAATGGGATTCATGTGATGATGGTGATGATGATGAGTGGAATCCGGTGGGTCAATCTCAACCCACGAGTTCCATACGTGGTAAAAAATGTAAAGTCTTACGATCAAGGAAAAGGGTGAGGCATGGAAGATCACTGTTGGATTGCCAAAGGGAAGCCTTGAGTAGTTCACAACAACAAAATCATCATGTTGTTATGCAGAGAGACAATGTTTATAAAGACAATGACAACATCTGTTCTATATGTCGTTATGGTGGTGAATTGGTACTCTGTGATACATGCCCATCCTCATTCCATCTCAGTTGTCTAGGTCTTGAGCAAGTTCCTGATGGTGATTGGTTTTGCCCACCATGTTGCTGCAAAATATGCAACAGACCAAAATATGGAGAAGATTGTGCAGATAATGTGGATTACAGTATCCTCGTTTGTGATCAATGTGAGCACAAATACCACATTGGGTGCCTAAAGACTAGAGGCTTGACCAGTAACTTGGAAAACCACCCTAATAAGAATTGGTTCTGCAATGCTCATTGTGAGAACATATTTTTCAGTCTACAAAAGCTGATAGGGAAACCAATTCTCGTGGGTGCAGATAATCTTACTTTGATATTGTTGAAGACTCTGAAAAGTGATAACCATGGAGATCTTACTTCTGAAGACCTTGAGCGCATGAGTCAAATTGAAAGCAAGCTAAGTGTGGCTCTTAGAGTATTCCATGAGTGTTTTGATCCACTTATTGATGCTCTCACCGGGAGAGATATCATATCAGATGTTATATTCAGCAGAGGTTCAGAACTTAATGGTTCCAACTTTCGTGGGTTCTACACAGTGATTTTGGAGAGGAATGACCAAGTGATTTCTGCTGCCACCATAAGGATTTATGGTCAGAAGGTTGCTGAGCTACCATTTGTTGCCACCAGGAGGAAGTTTCAAAGACTTGGAATGTGTAGCATCTTGATGAATGAGCTTGAGAAGCAGTTGACTCACTTGGGAATTGAGAGGATGATCTTGCCTTCCTCTCCCAGTGTGATAGACACTTGGACAAACTCATTTGGCTTTGCAAGGATGACAGATTTGGATAAGTTTCAATTTCTTGACTATACTTTTCTAGACTTCCAAGACACCATTATGTGCCACAAATTATTGATTGATTTGTGA 1269 0.4113 MRWITLNPRVSLITPLPLHSFLLKHKKQRAEPRKSKKRQWDSCDDGDDDEWNPVGQSQPTSSIRGKKCKVLRSRKRVRHGRSLLDCQREALSSSQQQNHHVVMQRDNVYKDNDNICSICRYGGELVLCDTCPSSFHLSCLGLEQVPDGDWFCPPCCCKICNRPKYGEDCADNVDYSILVCDQCEHKYHIGCLKTRGLTSNLENHPNKNWFCNAHCENIFFSLQKLIGKPILVGADNLTLILLKTLKSDNHGDLTSEDLERMSQIESKLSVALRVFHECFDPLIDALTGRDIISDVIFSRGSELNGSNFRGFYTVILERNDQVISAATIRIYGQKVAELPFVATRRKFQRLGMCSILMNELEKQLTHLGIERMILPSSPSVIDTWTNSFGFARMTDLDKFQFLDYTFLDFQDTIMCHKLLIDL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi297g00002 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 218 IPR013083 -
Gabi297g00002 422 SUPERFAMILY FYVE/PHD zinc finger 106 162 IPR011011 -
Gabi297g00002 422 ProSiteProfiles Zinc finger PHD-type profile. 113 158 IPR019787 -
Gabi297g00002 422 PANTHER PHD FINGER PROTEIN 12 78 420 IPR042163 GO:0003714|GO:0045892
Gabi297g00002 422 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 309 392 IPR016181 -
Gabi297g00002 422 SMART PHD_3 157 215 IPR001965 -
Gabi297g00002 422 SMART PHD_3 115 156 IPR001965 -
Gabi297g00002 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 156 IPR013083 -
Gabi297g00002 422 Pfam PHD-finger 115 157 IPR019787 -
Gabi297g00002 422 Pfam Acetyltransferase (GNAT) family 312 390 IPR000182 GO:0016747
Gabi297g00002 422 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 256 419 IPR000182 GO:0016747
Gabi297g00002 422 CDD NAT_SF 314 374 - -
Gabi297g00002 422 MobiDBLite consensus disorder prediction 26 66 - -
Gabi297g00002 422 SUPERFAMILY FYVE/PHD zinc finger 157 224 IPR011011 -
Gabi297g00002 422 Gene3D - 253 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi297g00002 Gabi-Chr297 43943 45211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi297g00002 80 367 PHD Transcription Factor Family AT5G58610 45.486 4.26e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi297g00002 Acetyltransf_1 4.2e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi297g00002 - - aprc:113866262 433.335