Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2978g00004 ATGGGTGGTTGTCTAACTAAAGGAAAAGATTCAGAGCCAGAACACAATGGTTACAGACATGCTGGTTCTGCTGGTGTTCATAACCAGAAGACTCATGAACCCTTGGTCAACCAATCAAGAGGACAAGCTTATCAACCTTACCAATTACCTGAAAAACATGCTGCATCTACTCAAACAGTGCCTCAGGTACCATGGAAGCCTTCTGTTCCTGCCCCAAGTCCAAGACCTGTTGTTAAGCAAGATACAATTCTTGGGAAGCCATTTGAGGATGTGAAATTGTTCTATACACTTGGGAAAGAATTGGGTAGAGGGCAATTTGGGGTAACACATCTATGCATTGAGAATTCAACCGGGTTGCAATATGCTTGCAAGTCCATTTCAAAGAGGAAACTTGTTAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAACATTTGAGTGGTCAACCCAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGAATTCTGTTCATGTTGTGATGGAGCTATGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGTCATTACAGCGAAAGGGCTGCTGCTTCAATATGCAGACAAATTGTCAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAAGGATGAAAATGCACTTCTCAAGGCAACAGATTTTGGCTTGTCCGTTTTCATTCAAGAAGGAAAGGTGTATCGTGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTACACCGCAGATGTGGAAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACCGAAAAGGGAATATTTGATGCCATATTGGATGGTCATATTGATTTTGAAAGTCAACCATGGCCTAAAATATCAAACAATGCCAAGGACCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACTTCAGCTCAGGTTCTAGAGCACCCGTGGATTAAAGATGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCCTTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGTGGTACAATCACCTATGAAGAACTAAAGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAACAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGGCACAAGTTGGAAAAAGATGACCAGCTTTTCAAGGCCTTCCAATATTTTGATAAAGACAATAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGAAGCCACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATAATGATGGTAGAATCAACTATGATGAATTCTGTGCAATGATGAGGAGTGGAAACCAACAACAAGGAAAGCTATTCTAA 1650 0.3994 MGGCLTKGKDSEPEHNGYRHAGSAGVHNQKTHEPLVNQSRGQAYQPYQLPEKHAASTQTVPQVPWKPSVPAPSPRPVVKQDTILGKPFEDVKLFYTLGKELGRGQFGVTHLCIENSTGLQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIQEGKVYRDIVGSAYYVAPEVLHRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILDGHIDFESQPWPKISNNAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMEAADVDGNGSIDYIEFITATMHRHKLEKDDQLFKAFQYFDKDNSGFITRDELETAMKEYGMGDEATIKEIISEVDTIISEVDTDNDGRINYDEFCAMMRSGNQQQGKLF 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2978g00004 549 MobiDBLite consensus disorder prediction 30 64 - -
Gabi2978g00004 549 FunFam calcium-dependent protein kinase 1 181 360 - -
Gabi2978g00004 549 SMART efh_1 471 499 IPR002048 GO:0005509
Gabi2978g00004 549 SMART efh_1 513 541 IPR002048 GO:0005509
Gabi2978g00004 549 SMART efh_1 399 427 IPR002048 GO:0005509
Gabi2978g00004 549 SMART efh_1 435 463 IPR002048 GO:0005509
Gabi2978g00004 549 Gene3D Phosphorylase Kinase; domain 1 97 180 - -
Gabi2978g00004 549 Pfam EF-hand domain pair 470 539 IPR002048 GO:0005509
Gabi2978g00004 549 Pfam EF-hand domain pair 400 460 IPR002048 GO:0005509
Gabi2978g00004 549 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Gabi2978g00004 549 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Gabi2978g00004 549 Pfam Protein kinase domain 95 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2978g00004 549 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Gabi2978g00004 549 ProSitePatterns EF-hand calcium-binding domain. 522 534 IPR018247 -
Gabi2978g00004 549 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Gabi2978g00004 549 CDD STKc_CAMK 94 352 - -
Gabi2978g00004 549 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Gabi2978g00004 549 ProSiteProfiles EF-hand calcium-binding domain profile. 509 544 IPR002048 GO:0005509
Gabi2978g00004 549 CDD EFh 471 539 IPR002048 GO:0005509
Gabi2978g00004 549 SUPERFAMILY Protein kinase-like (PK-like) 95 373 IPR011009 -
Gabi2978g00004 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Gabi2978g00004 549 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 534 - -
Gabi2978g00004 549 Gene3D Transferase(Phosphotransferase) domain 1 181 360 - -
Gabi2978g00004 549 SMART serkin_6 95 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2978g00004 549 MobiDBLite consensus disorder prediction 1 77 - -
Gabi2978g00004 549 FunFam Calcium-dependent protein kinase 1 360 542 - -
Gabi2978g00004 549 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Gabi2978g00004 549 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Gabi2978g00004 549 ProSiteProfiles Protein kinase domain profile. 95 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2978g00004 549 Coils Coil 417 437 - -
Gabi2978g00004 549 Gene3D - 361 545 - -
Gabi2978g00004 549 SUPERFAMILY EF-hand 392 539 IPR011992 -
Gabi2978g00004 549 FunFam Calcium-dependent protein kinase 1 97 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2978g00004 Gabi-Chr2978 23852 28344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2978g00004 1 549 EF-hand Containing Proteins AT3G20410 73.381 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2978g00004 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2978g00004 K13412 - gmx:100798651 998.808