Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2978g00001 ATGGTTGCTCCAGAGAAATGCATAGGGAATGTGGTGGCTGTGAAGAGTTCAATGCCTCACTCAATAGGTTCATTGATGAGAGAAGAAAGTATAATCAGATCGTTGATTGGTTGTGAAGAATTGCTTCAATGCCATTTTGGCCAATTCACTATTGAGAAGAGTGAATTCATCTATAATCTTGTTATGGAATTTGCACCTTATGCTGGAGTTGTTCATTGTGATTTAAAGCCCGATAACATTCTTCTCTTTCCTTCATCCAAGAATGATGCAAAGAATCAACTCAAGATTGCAGATTTTGGATTGTCCAAGACTAAAGAAGAGATTATCAATGCTGAGTATTGGAATTTCAGGTTTAGGGGGACACCATTATACATGTCACCAGAATCAAGGAACCCTCCAACTTCAAAGGAGATGATTCCAACTACAAATGAGATGATGTACAAGCTTGCTGTCTTTGAAGAAGCACCAAAGATTCCTAATGGAGTAAGTGAGGATTGCAGAGATTTCTTGAGCAAACGTTTCATCAAGAATCCTAGTCAGAGATGGACTGCTAGCAAGCTTCTCCACCATCCTTTTCTATTTTCTCCATATGATTCTTTTAGAGTTTTGGGTGCAATGGTCCCTGTTTCCAGAACTGAAGGTGGAGCTGGCACACAAATACTCTCAGCTATAGTGCGCAAAACCATCCAATCCATCAAGGAAATCGTAGGGAATCATTCTGATGCTGATATCTATGTAGCCCTTAAGGAAACAAACATGGATCCTAACGAAGCCACTCTGAAATTGCTCAACCAAGATCCATTCCATGAGGTGAGGAGAAGGAGAGACAGAAAGAAGGAGCCTCGGAATATTGGGAACAAAGGTTCAGCTGACCCAAGGAGGCATTATGAGAATGTTGGTCAAGGAATGAAATCTCATATCTCATCTGAACGTAATGTTCTTAGAAGAATAAACTATTCTCGGAACACTTTTCAATCAGTTGGTGCCATCTCGAAGACTGAACAATTTAGTCGAACTAATGTAACTGAACCTTCATTCCCTGGCATGACAGTTAGTAGGCCGTCCTTGAACAATCAATATAATAGTAGGCCACATCAACAACTCGCGAGACATCAGAGAGTTTCCCAGCAGAATAAAGTGTGGAAACCTAAATCAAGTCAGAAGTCTAACAGCAATACTCCTGGAGTGATTGGAACTCCTAAAAAAGCTGCTTCACCTCCAGTTGAAAATTCTATAGATATAGAATCAAACGCTGCAGAG 1260 0.404 MVAPEKCIGNVVAVKSSMPHSIGSLMREESIIRSLIGCEELLQCHFGQFTIEKSEFIYNLVMEFAPYAGVVHCDLKPDNILLFPSSKNDAKNQLKIADFGLSKTKEEIINAEYWNFRFRGTPLYMSPESRNPPTSKEMIPTTNEMMYKLAVFEEAPKIPNGVSEDCRDFLSKRFIKNPSQRWTASKLLHHPFLFSPYDSFRVLGAMVPVSRTEGGAGTQILSAIVRKTIQSIKEIVGNHSDADIYVALKETNMDPNEATLKLLNQDPFHEVRRRRDRKKEPRNIGNKGSADPRRHYENVGQGMKSHISSERNVLRRINYSRNTFQSVGAISKTEQFSRTNVTEPSFPGMTVSRPSLNNQYNSRPHQQLARHQRVSQQNKVWKPKSSQKSNSNTPGVIGTPKKAASPPVENSIDIESNAAE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2978g00001 420 MobiDBLite consensus disorder prediction 265 308 - -
Gabi2978g00001 420 MobiDBLite consensus disorder prediction 335 420 - -
Gabi2978g00001 420 SMART serkin_6 2 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2978g00001 420 Gene3D Transferase(Phosphotransferase) domain 1 60 134 - -
Gabi2978g00001 420 SUPERFAMILY UBA-like 224 282 IPR009060 GO:0005515
Gabi2978g00001 420 MobiDBLite consensus disorder prediction 281 300 - -
Gabi2978g00001 420 SUPERFAMILY Protein kinase-like (PK-like) 9 210 IPR011009 -
Gabi2978g00001 420 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 323 419 - -
Gabi2978g00001 420 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2978g00001 420 MobiDBLite consensus disorder prediction 335 398 - -
Gabi2978g00001 420 Pfam Protein kinase domain 68 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2978g00001 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672|GO:0006468
Gabi2978g00001 420 Pfam GBF-interacting protein 1 N-terminal 224 280 IPR009719 -
Gabi2978g00001 420 Gene3D Transferase(Phosphotransferase) domain 1 135 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2978g00001 Gabi-Chr2978 6905 13354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2978g00001 11 198 MAP Kinase Kinase Kinase AT5G67080 31.727 6.01e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi2978g00001 Pkinase 1.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2978g00001 - - gmx:102667952 207.994