Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2974g00025 ATGGCATCATTTGCAGGCACTACCCAAAAGTGTAAAGCATGCGAGAAGACAGTGTACTTGGTGGATCAGCTCACTGCTGATAACAAGGTCTATCATAAATCTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGTTGAGTAATTTTTGTTCCTTTGAGGGCGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTCGAAGGTATTCCAAGAACTGCTAGACGTGAAAGATCTACCGATCAGGTCCAAACCAATAGCAAGGTTTCAAATTTGTTTGCCGGAACTCAGGAAAAATGTCTTGCTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAGCATCTTACCATAAGGCATGTTTCAGGTGCACCCATGGAGGATGTGTAATTAGCCCATCAAATTATGTGGCCCACGAACATCGTCTTTATTGTAGGCACCACCATACTCAATTGTTCAAGCAGAAAGGTAACTTCAGTCAACTTGACAAGCAAGAAAATGTTGAAGGGGAGACTAAGAACACAACAACTTTCAGTCAACTTGACAAGCAAGAAAATGTTGAAGGGGAGACTAAGAACACAACAACTTTCAGGCAACTTGACAAGCAAGAAAATGTTGAAGGGGAGACTGAGAACACAACAACTGAGTAA 690 0.4145 MASFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNFCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRTARRERSTDQVQTNSKVSNLFAGTQEKCLACKKTVYPIEKVAVDGASYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENVEGETKNTTTFSQLDKQENVEGETKNTTTFRQLDKQENVEGETENTTTE 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2974g00025 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Gabi2974g00025 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Gabi2974g00025 229 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Gabi2974g00025 229 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Gabi2974g00025 229 FunFam LIM domain and actin-binding 1 5 75 - -
Gabi2974g00025 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Gabi2974g00025 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Gabi2974g00025 229 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Gabi2974g00025 229 PANTHER OS06G0237300 PROTEIN 2 94 - -
Gabi2974g00025 229 Gene3D Cysteine Rich Protein 5 75 - -
Gabi2974g00025 229 Gene3D Cysteine Rich Protein 104 174 - -
Gabi2974g00025 229 CDD LIM2_SF3 110 170 - -
Gabi2974g00025 229 CDD LIM1_SF3 7 68 - -
Gabi2974g00025 229 Pfam LIM domain 11 65 IPR001781 -
Gabi2974g00025 229 Pfam LIM domain 110 165 IPR001781 -
Gabi2974g00025 229 MobiDBLite consensus disorder prediction 177 229 - -
Gabi2974g00025 229 SMART lim_4 109 161 IPR001781 -
Gabi2974g00025 229 SMART lim_4 10 62 IPR001781 -
Gabi2974g00025 229 FunFam LIM domain and actin-binding 1 104 174 - -
Gabi2974g00025 229 MobiDBLite consensus disorder prediction 177 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2974g00025 Gabi-Chr2974 401103 404362 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gabi2974g00025 LIM 3.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2974g00025 K09377 - gmx:100500501 385.571