Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2974g00020 ATGGGTGGCAATGGCAAGCATAGGTGGAAAATCTCCTTTCATCGTTCTTCCTCTCACTCAAAGCTGGAACCAAAACACCCTCCCAAGGAGTTCTTATGTCCCATTTCCGGGTCCTTAATGTCCGACCCGGTTGTCGTCGCTTCGGGTCAGACCTTCGAACGCCTCGCCGTCCAAGTCTGCACTGCTTTGAACCACTCTCCCATTCTGGAAGACGGGTCCCGACCCGATTTCTCAGCTGTCATCCCCAATTTGGCCATTAAAACAACCATCCTCAACTGGTGCGACAAATCCGGTACCCAACACCCGCCCGCACCTGATTACCCCTCCGTGGAGAGGCTCGTCCGGGAAGCAATGGCGGCGGAGACTGCGGCGGTAGAGGCTCAGGAAGACCGAATTAGGGTTTCCGAGAAGGAGCTGCTCAAGGCGGTGGCGGATACCCCGCCGGTGATTTTCTCCCACGCCGCCACCGAGTTGGGACCACGAGTCAACCACTACAACTCGGGATCGTCGTCGGAGGAATCGGTTATAATCGCGGCGAGTCCGGGAACCCCCTTGCCGCTGACGATTCGCCCAACGTGCTTCTCTTTCTCCTCGTCGTCCTCCTGCGAGATCGAAATCCAAAACCCTAGCATACCGGCATCGGAAGAGGAAGAGAAATTGGTGAACAAGCTGAGGAGCAGCGAGGTTTTCGAGCAAGAAGCAGGGGTAATCTCGCTGAGGAGCATCACGAGGAACAGGGAGGAGACTAGGGTTTCACTGTGCACGCCGCGGTTGCTATTGGCACTGCGTTCGCTGATTTTGTCTCGATACGCCGTCGTTCAGGTCAATTCGGTGGCTTCGGTGGTCAACCTTTCGCTGGAGAAACCGAACAAGGTGAAGATCGTGAGGTCAGGGTTCATCCCCTTCCTCATCGACGTGTTGAAGGGGGGATCCAATGAGTCGCAGGAGCACGCTGCGGGCGCGCTCTTCAGCTTGGCTTTGAACGATGATAACAAGATGGCCATTGGGGTTCTCGGCGCGTTGCAGCCACTCATGCACGCGCTGAGGTCCGATTCTGAGCGGACTCGGCATGACTCGGCTCTCGCGCTGTATCACCTCACTCTGGTTCAGAGTAACCGAGTCAAGCTCGTGAAACTCGGGGTGGCCCCCACGCTGCTTTCGATGGTGAAGTCGGGGACATTGGCTAGCCGGGTTTTGCTGATTCTGTGCAACCTTGCGGTGTCCACGGAGGGACGGACGGCGTTGCTGGACGCCAACGCGGTGGAGTGCTTGGTGGGGTTGCTGAGGGGGAACGAGTTGGACTCGGAGGCGACTCGGGAGAACTGTGTGGCGGCGCTGTATGCGCTGAGTCACAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGAGGCCAGGGTTGTGGAGGTTTTGAAGGAGATTGAGGAGACGGGAACGGAGAGGGCTAAAGAGAAGGCCAAGAGAGTGTTGCAGATGATGAGGACTCAGAATCAAGAGGGTTTGGACTTTAATGAGGTTTTGGAATCGGGCGGGTTGACTCGAACCAGGAACCGAGTTGGTGGTGGGAGGAATGCCAACCTTGTCAACACAACTACATTTTAG 1596 0.5664 MGGNGKHRWKISFHRSSSHSKLEPKHPPKEFLCPISGSLMSDPVVVASGQTFERLAVQVCTALNHSPILEDGSRPDFSAVIPNLAIKTTILNWCDKSGTQHPPAPDYPSVERLVREAMAAETAAVEAQEDRIRVSEKELLKAVADTPPVIFSHAATELGPRVNHYNSGSSSEESVIIAASPGTPLPLTIRPTCFSFSSSSSCEIEIQNPSIPASEEEEKLVNKLRSSEVFEQEAGVISLRSITRNREETRVSLCTPRLLLALRSLILSRYAVVQVNSVASVVNLSLEKPNKVKIVRSGFIPFLIDVLKGGSNESQEHAAGALFSLALNDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVAPTLLSMVKSGTLASRVLLILCNLAVSTEGRTALLDANAVECLVGLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKEARVVEVLKEIEETGTERAKEKAKRVLQMMRTQNQEGLDFNEVLESGGLTRTRNRVGGGRNANLVNTTTF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2974g00020 531 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Gabi2974g00020 531 Gene3D - 214 493 IPR011989 -
Gabi2974g00020 531 SUPERFAMILY RING/U-box 14 102 - -
Gabi2974g00020 531 FunFam RING-type E3 ubiquitin transferase 215 491 - -
Gabi2974g00020 531 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Gabi2974g00020 531 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Gabi2974g00020 531 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2974g00020 531 SUPERFAMILY ARM repeat 218 495 IPR016024 -
Gabi2974g00020 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515
Gabi2974g00020 531 Pfam U-box domain 28 96 IPR003613 GO:0004842|GO:0016567
Gabi2974g00020 531 Coils Coil 110 130 - -
Gabi2974g00020 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Gabi2974g00020 531 PANTHER U BOX DOMAIN-CONTAINING 21 493 - -
Gabi2974g00020 531 SMART arm_5 287 327 IPR000225 GO:0005515
Gabi2974g00020 531 SMART arm_5 328 368 IPR000225 GO:0005515
Gabi2974g00020 531 SMART arm_5 408 451 IPR000225 GO:0005515
Gabi2974g00020 531 FunFam RING-type E3 ubiquitin transferase 9 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2974g00020 Gabi-Chr2974 344657 346956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2974g00020 1 531 U-box Gene Family AT5G65200 56.838 0.0 579