Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2974g00011 ATGTCTTGTTCTACCGCCTCTCCCAAGCACCACACCTATAGCCGTAAAGACAAATCTCTGGGTCTCTTATGCACCAATTTCTTGAGCTTGTACAATAAAGATGGCGTCCACTTAATCAGCCTCGATGAGGCCGCTTCAAAGTTAGGGGTTGAAAGGCGCCGGATCTACGATATCGTTAACATATTGGAAAGTGTCGGAGTGGTTGCAAGAAAAGCTAAGAATCAATATACTTGGAAAGGCTTTGCAGCAATTCCGGAGGCTTTACAAGAACTCAAGGATGAGGGTCTGCAGGAGATTCCAAATTCCTTTGACGGTGGCAACGATAATGCAAAAGGTTCTGAAGACGAGGAGGATGAAGAAATAACATTAAATCCGAGTATGGAAAATCAGAGTGACAAGTCAAATCCTAATTCATCCACTCTTGTAAAATCTTTGAAGAATGAAAACAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTATTAAGCTCTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGACCCATACAAGAGACACAAGAAAACCAGCATTCCGGTGGCTGGGCTTGAAAGCGAAAACATTGAGCGAGTCAGTTGAGTCTGCTCACAATTCAAATATCAACGAGTCAAGGAGAAGGATGTTTGGAAATGACATCACAAACATAAGTTTTAAGCGGAATGAAGTTGATTTGTTCATGAACGGGGACATTTACCAACACTCCAAGGTGAAAAATAAACAGCAAAATCATAGTTGCCTGGCTCAGCCAAAGAAAAGCGATTCACAACAAGATGCAAAACAGACTTCAAGGAGCTATCAGTTTGGCCCTTTCGCTCCAGATTCTGTGCCCAAAGTTGGAGCTTCTAAGGACAATAGTGTGAAGCGGGTGCATGATTGGGACAGTCTCGCAACTTTGCATCGTCCACAGTATCAAAACCAAGCTGTGAGAGACGTCTTCTCCCACTACATGGAAGCATGGAAATCTTGGCACTCAGAAGTTGCTGGGAAAAGGCCAATAAATTTTTTGTAA 1152 0.421 MSCSTASPKHHTYSRKDKSLGLLCTNFLSLYNKDGVHLISLDEAASKLGVERRRIYDIVNILESVGVVARKAKNQYTWKGFAAIPEALQELKDEGLQEIPNSFDGGNDNAKGSEDEEDEEITLNPSMENQSDKSNPNSSTLVKSLKNENRREKSLALLTQNFIKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTRDTRKPAFRWLGLKAKTLSESVESAHNSNINESRRRMFGNDITNISFKRNEVDLFMNGDIYQHSKVKNKQQNHSCLAQPKKSDSQQDAKQTSRSYQFGPFAPDSVPKVGASKDNSVKRVHDWDSLATLHRPQYQNQAVRDVFSHYMEAWKSWHSEVAGKRPINFL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2974g00011 383 MobiDBLite consensus disorder prediction 284 316 - -
Gabi2974g00011 383 Gene3D - 145 233 IPR036388 -
Gabi2974g00011 383 Gene3D - 9 82 IPR036388 -
Gabi2974g00011 383 PANTHER TRANSCRIPTION FACTOR E2F 6 352 IPR015633 GO:0000978|GO:0006357
Gabi2974g00011 383 SMART E2F_TDP_2 150 230 IPR003316 GO:0005667|GO:0006355
Gabi2974g00011 383 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
Gabi2974g00011 383 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Gabi2974g00011 383 MobiDBLite consensus disorder prediction 98 141 - -
Gabi2974g00011 383 MobiDBLite consensus disorder prediction 284 329 - -
Gabi2974g00011 383 SUPERFAMILY "Winged helix" DNA-binding domain 152 231 IPR036390 -
Gabi2974g00011 383 MobiDBLite consensus disorder prediction 124 141 - -
Gabi2974g00011 383 FunFam E2F transcription factor-like E2FE 145 232 - -
Gabi2974g00011 383 FunFam E2F transcription factor 8 10 82 - -
Gabi2974g00011 383 Pfam E2F/DP family winged-helix DNA-binding domain 152 230 IPR003316 GO:0005667|GO:0006355
Gabi2974g00011 383 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2974g00011 Gabi-Chr2974 141291 155525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2974g00011 10 380 E2F-DP Transcription Factor Family AT3G48160 54.762 1.29e-131 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi2974g00011 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2974g00011 K09391 - gmx:100806151 523.087