Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00039 ATGGCGATTGCAACAGAGAATCAACCTCAACCTCAACCTCAACAGCACAAGGCTTCTTCGGAGGTTTCAGGTTCAGCTATGGAGCAAAGAAGGTGGACCCTTAATGATTTTGATATTGGAAAACCTCTTGGAAGGGGGAAATTTGGCCACGTCTATTTGGCCAGAGAAAAGAGAAGTAATCATATTGTTGCTCTGAAAGTGCTCTTTAAGAGCCAATTGCAACAATCCCAAGTTGAGCATCAGCTTCGGCGAGAAGTTGAAATACAAAGTCATCTCCGACATCCCCACATCTTACGCCTTTATGGATACTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAGTTACAGAAATGCAAATATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCCCTTATATATTGCCATGGAAAGCATGTAATACATAGGGACATTAAACCGGAGAACCTTCTAATTGGCGCACAGGGTGAACTTAAGATAGCAGACTTTGGATGGTCGGTGCACACATTCAATCGCAGGCGGACCATGTGTGGCACACTGGATTACCTTCCTCCTGAGATGGTGGAGAGTGTTGAACATGATGCGAGTGTGGATATATGGAGCCTTGGGGTCCTGTGCTACGAGTTTCTTTATGGAGTCCCTCCTTTTGAGGCTAAAGAGCATTCTGATACTTATAGGAGGATAGTACAAGTGGATCTCAAGTTCCCTCCTAAACCAATTGTATCTTCCACTGCAAAGGACCTCATCAGTCAGATGCTGGTTAAGGATTCCTCTCAACGTCTACCTTTGTACAAACTCCTCGAACACCCTTGGATTGTTCAGAATGCGGAGCCCTCCGGTGTATATAGGGGCTAG 903 0.4452 MAIATENQPQPQPQQHKASSEVSGSAMEQRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSTAKDLISQMLVKDSSQRLPLYKLLEHPWIVQNAEPSGVYRG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00039 300 Gene3D Phosphorylase Kinase; domain 1 24 120 - -
Gabi2973g00039 300 PIRSF ILK 4 285 - -
Gabi2973g00039 300 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Gabi2973g00039 300 SUPERFAMILY Protein kinase-like (PK-like) 21 292 IPR011009 -
Gabi2973g00039 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Gabi2973g00039 300 Gene3D Transferase(Phosphotransferase) domain 1 121 296 - -
Gabi2973g00039 300 SMART serkin_6 37 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00039 300 ProSiteProfiles Protein kinase domain profile. 37 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00039 300 FunFam Aurora kinase A 29 120 - -
Gabi2973g00039 300 FunFam serine/threonine-protein kinase Aurora-1 121 296 - -
Gabi2973g00039 300 CDD STKc_Aurora 36 289 - -
Gabi2973g00039 300 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 6 299 IPR030616 GO:0004672
Gabi2973g00039 300 Pfam Protein kinase domain 39 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00039 300 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00039 Gabi-Chr2973 353582 356667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00039 28 299 CBL-interacting serine-threonine protein kinases AT5G10930 35.125 1.52e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Gabi2973g00039 Pkinase 3.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00039 K08850 - gmx:100803678 583.948