Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00032 ATGAATTCCCGGCAAAATCCCCAACCGGAGCTTCGGACACGTACATCTGCAATGTCCAAAATACCCCTCCTCATTCTGAAATTCCCAGTTCATTTGTTCCTCTTGCTCATCGTCGCAGTACCCTCCCAAGTAATTTCTCAACCCACAAGTACCGAACAAACAATCCTACTCACCCTCAAACGCCAACTGGGGGATCCACCAACGCTCCCATCATGGAAACCCTCATCGTCCTCGCCGTGCGACTGGCCGGAGATCCGGTGCACCGGCGCCGCCGCCACCGAGCTCCTCCTAGCCGGCAAAAACATCACCGTCCAGAATCTCCCGGCCACAATCTGCGACCTCAAGAACCTGACCAAGCTTGACCTCTCCGACAACTCCATCGCCGGCGAGTTCCCGACATTGTTGTACAACTGCTCCAACCTCCGGTACCTCGACCTGTCCCAGAACTACTTCGCCGGCGCAATCCCCGCCGACATTAACCGCCTCAAAACTCTGACGTACCTCAACCTCGGCGGCAACAGTTTCACCGGCGACGTCCCGGCGGCGATAGGGAAGCTCCCGGAGTTGCAAACGCTGCACATCTTTCAGAACAACTTCAACGGAACCTTCCCAAAGGAAATCGGAGACTTGTCCAATCTCGAAATCCTAGGTTTGGCTTATAACGACAAGCTTGCCCCCATGGCGATCCCGTTCGAGTTTGGGAACCTGAGGAGTTTAAAGTTCATGTGGATAACACGGTGTAACTTGATCGGAGAGATTCCAGAAAGTTTGGGGAATCTCACGAGTATGGAGCAGTTGGATTTGTCGCAGAACAATTTGACAGGAAGCATTCCTAGTAGTTTGTTCTCGCTGAGGAACTTGACGTTTTTGTACCTGTACCGTAATAGGTTGTCGGGTGTGCTACCAATTTCGGTGCAAGCCTTGAATTTGACCCAGATTGATTTGGCCACTAACAATTTGACAGGTTCCATACCCCAAGATTTTGGGAAGTTGAAGAATTTGATGATGCTGCACTTGTATTCGAATCAGTTGTCTGGCCAGATTCCAAGCAGCTTAGGACTAATCCCAAGTTTGAAAAACTTGAGGGTTTTTAGCAATAAGCTAAATGGAACACTGCCTCCAGAACTAGGCCTTTATTCGAAGCTTGTTGCTTTTGAAGTTGCTGATAATCAACTCAGTGGTGGGTTGCCAGAACATTTGTGTGCTGGTGGTGCTTTGCGGGGTGTGATTGCTTTTAACAACAATCTAAGTGGAGACTTGCCTCAATGGCTTGGGAATTGTGCTTCTCTTACCACGGTTCAGCTTTACAATAACAAATTTTCAGGGGAGGTTCCTTTGGGTTTGTGGACTTTGAGCAACATATCAACCCTGATGTTGAGCAACAACTCCTTTTCTGGTCAACTTCCAAGTAAACTATCTTGGAATATGTCGAGACTTGAGATCAGGAACAACAACTTTTCTGGTCAGATTTCTCTTGGTATTTCTTCTGCTGTGAATCTAGTGGTTTTTGATGCAAGAAACAACTTGCTTTCTGGTGAAATTCCAAGGGAATTGACTGGTCTTTCACGGCTTACTACTCTCATGATTGATGGTAATCAACTTTCTGGTGCACTTCCATCCGAGATAATCTCATGGCAATCACTGAATACTTTAACACTCTCAAGGAACAAAATTTCCGGCCAAATCCCCGGAGCTATAGGTGGTCTTCCTAACCTTGTTTACGTGGACTTGTCTGAAAATGACATATCCGGTGAAATCCCACCTCAGCTTGCCAATTCGAGGTTTGTTTTTCTCAACTTGTCTTCTAACAAGCTTTCCGGGAACATCCCTGATGAGTTCAATAACCTTGCATATGAAAACAGTTTCTTGAACAATCCTCAACTATGTGCTTACAATCCAAAACTCAACCTTTCGAGCTGCTTGACCAAAACCCTTCCACACTCCACCAATTCCTCTTCGAAATTCCTTGCCCTGATTCTTGCTGTCCCCATCACTGTGTTGCTGGCCACTGCCTCGTTGGCCTTCTATAAGTTGAAAAAGCACTTGGGCAAAAAGCACTGCGGGCGTAAGCTTTCAACATGGAGGCTCACCTCATTCCAGAGGCTTGATCTTACAGAAATAAATCTCTTCTCAAGTTTGACAGAGAATAACCTTATAGGAAGTGGAGGATTTGGTAAAGTTTACCGGATTGCTTCAACTCGTCCGGGTGAGTATGTTGCAGTAAAAAAGATTTGGAATTGCAAAGATCCGGATAACAAGATGGAGAAAGAATTCATGGCCGAGGTTGAAATCCTGGGCAATATTCGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTATTCAAGTGAGAACTCCAAACTCCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTTCGTAGAAAGAAGAAGCTATCAGCTACTGGGTTGAGTTCACCAAACAAGAATCATCTGGTGTTAAGTTGGCCAACGAGGTTGAAGATTGCCATTGGTGCAGCTCAAGGCCTATCTTACATGCACCATGACTGTTCACCGCCAATCATACACCGAGATGTCAAGTCTAGCAATATATTGCTTGACTCAGAGTTCAGGGCGAGTATAGCAGATTTTGGGCTCGCCAAGATGTTGGCAAAGCCTGGGGAACTACAATCCATGTCTGTTCTAGCAGGTTCTTTTGGCTACATTCCACCAGAATATGCATATTCAACAAAGATTAACGAGAAAGTTGATGTATATAGCTTTGGGGTTGTACTCCTAGAGCTTGTTACGGGAAGAGAGCCTAATAGTGGAGGCGAGCATGCCTGCAGCCTAGTTGATTGGGCATGGCAGCATTACAGTGAAGGGAAGTGCCTCACCGAAGCTTTTGATGAGGATATCAAAGAAACACGTTATGCGGAGGAGATGACTACCGTATTCAAATTAGGCCTCGTTTGCACTAGCTCTTTACCCTCAACTAGGCCTTCCATGCAGGAGATTTTGCAAGTTCTTCGTCAGTGTCATCCTCCAGGTTCTGCACGTAACAGAGTGGCAACTGAGTTTGATATCACTCCTCTTCTTGGTGATGCAATGTACATTTCTAGTTACAAGGATAGTAATGCTGCATGCGGAAATGAAGAAAGCAGCCTGTACAGTGTGTAA 3147 0.4598 MNSRQNPQPELRTRTSAMSKIPLLILKFPVHLFLLLIVAVPSQVISQPTSTEQTILLTLKRQLGDPPTLPSWKPSSSSPCDWPEIRCTGAAATELLLAGKNITVQNLPATICDLKNLTKLDLSDNSIAGEFPTLLYNCSNLRYLDLSQNYFAGAIPADINRLKTLTYLNLGGNSFTGDVPAAIGKLPELQTLHIFQNNFNGTFPKEIGDLSNLEILGLAYNDKLAPMAIPFEFGNLRSLKFMWITRCNLIGEIPESLGNLTSMEQLDLSQNNLTGSIPSSLFSLRNLTFLYLYRNRLSGVLPISVQALNLTQIDLATNNLTGSIPQDFGKLKNLMMLHLYSNQLSGQIPSSLGLIPSLKNLRVFSNKLNGTLPPELGLYSKLVAFEVADNQLSGGLPEHLCAGGALRGVIAFNNNLSGDLPQWLGNCASLTTVQLYNNKFSGEVPLGLWTLSNISTLMLSNNSFSGQLPSKLSWNMSRLEIRNNNFSGQISLGISSAVNLVVFDARNNLLSGEIPRELTGLSRLTTLMIDGNQLSGALPSEIISWQSLNTLTLSRNKISGQIPGAIGGLPNLVYVDLSENDISGEIPPQLANSRFVFLNLSSNKLSGNIPDEFNNLAYENSFLNNPQLCAYNPKLNLSSCLTKTLPHSTNSSSKFLALILAVPITVLLATASLAFYKLKKHLGKKHCGRKLSTWRLTSFQRLDLTEINLFSSLTENNLIGSGGFGKVYRIASTRPGEYVAVKKIWNCKDPDNKMEKEFMAEVEILGNIRHSNIVKLLCCYSSENSKLLVYEYMENQSLDKWLRRKKKLSATGLSSPNKNHLVLSWPTRLKIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDSEFRASIADFGLAKMLAKPGELQSMSVLAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGREPNSGGEHACSLVDWAWQHYSEGKCLTEAFDEDIKETRYAEEMTTVFKLGLVCTSSLPSTRPSMQEILQVLRQCHPPGSARNRVATEFDITPLLGDAMYISSYKDSNAACGNEESSLYSV 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00032 1048 ProSiteProfiles Protein kinase domain profile. 713 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00032 1048 Gene3D Ribonuclease Inhibitor 227 373 IPR032675 -
Gabi2973g00032 1048 Gene3D Ribonuclease Inhibitor 476 720 IPR032675 -
Gabi2973g00032 1048 SMART serkin_6 713 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00032 1048 Gene3D Ribonuclease Inhibitor 374 475 IPR032675 -
Gabi2973g00032 1048 FunFam Highly similar to receptor-like protein kinase 308 475 - -
Gabi2973g00032 1048 Gene3D Ribonuclease Inhibitor 49 226 IPR032675 -
Gabi2973g00032 1048 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524
Gabi2973g00032 1048 SUPERFAMILY RNI-like 96 442 - -
Gabi2973g00032 1048 Gene3D Transferase(Phosphotransferase) domain 1 794 1014 - -
Gabi2973g00032 1048 FunFam Receptor-like protein kinase HSL1 693 792 - -
Gabi2973g00032 1048 SUPERFAMILY Protein kinase-like (PK-like) 707 999 IPR011009 -
Gabi2973g00032 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Gabi2973g00032 1048 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 204 303 - -
Gabi2973g00032 1048 Pfam Leucine rich repeat N-terminal domain 54 87 IPR013210 -
Gabi2973g00032 1048 SMART LRR_typ_2 451 475 IPR003591 -
Gabi2973g00032 1048 SMART LRR_typ_2 331 355 IPR003591 -
Gabi2973g00032 1048 SMART LRR_typ_2 569 593 IPR003591 -
Gabi2973g00032 1048 SMART LRR_typ_2 186 210 IPR003591 -
Gabi2973g00032 1048 SMART LRR_typ_2 521 545 IPR003591 -
Gabi2973g00032 1048 SMART LRR_typ_2 114 138 IPR003591 -
Gabi2973g00032 1048 SMART LRR_typ_2 260 284 IPR003591 -
Gabi2973g00032 1048 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 228 994 - -
Gabi2973g00032 1048 FunFam Kinase family with leucine-rich repeat domain-containing protein 793 1015 - -
Gabi2973g00032 1048 Pfam Protein kinase domain 715 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00032 1048 FunFam Receptor-like protein kinase HSL1 isoform A 49 201 - -
Gabi2973g00032 1048 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 515 637 - -
Gabi2973g00032 1048 Gene3D Phosphorylase Kinase; domain 1 721 793 - -
Gabi2973g00032 1048 Pfam Leucine rich repeat 247 297 IPR001611 GO:0005515
Gabi2973g00032 1048 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Gabi2973g00032 1048 SUPERFAMILY L domain-like 389 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00032 Gabi-Chr2973 308305 311668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00032 38 1022 Receptor kinase-like Gene Family AT5G25930 55.061 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2973g00032 Pkinase 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00032 - - adu:107461025 1524.61