Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00022 ATGCCTGAGCTGCGTACCCGACCTCGCAGAAACCGCCTGTTAGATAACGCTAATACGAATCCGATTACCCGACCTCACTCACCGGCGGCCGTCGGAGCCGGCCGGAGGAGGAGAACCTCCGCCGCTGCTACTCAGACCAAGAGGAATCGGAGGCAGAAGAACGCGATCGCTGCAGATGAAATCGGTCATATTGTGAACAACGACGACGCCGGTGCCGTTCGTGAAGCCAGGGCCAGAGAGTTGAAAGACGAGCAAGGAGAGCCGGTTAGGGTTTTGGAGGAGGAAGCCATGGATGAGTATGATAGTGGTGGCCGCAGCGCCGATAAGGCTCCGGGTGCCGAAGACGATGGCAGCACCGCTCCACTTCCTGAGAAGGTCCAGGTTGGTTGTTCCCCGTTATACAGAGTTGAGAGAAAACTTGGGAAAGGAGGATTTGGACAAGTCTATGTTGGTCGGCGTGCAGGAGCTACTACAAATTCTAGTGAACGAACTGGTTCGGCCGCTATTGAGGTAGCTTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGTCACGGTGTTCCACGAGTTCATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATTCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCGACTGAAATGGTTGCATGTATCGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCACGGTGATGTAAAGCCGGAGAACTTTTTGCTTGGCCCCCCTGGAACTCCTGATGAGAAGAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGATAGTTCAACTGGCCTTCATGTTGACTATGATCAACGCCCAGATGTATTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATTTCAGGGAGAAAATAAAGGATTTCAAGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAGCTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGTCCAAATCCAGACATCAGGCCAATAAACACTGAGGGTGCTCAAAAGCTTATATGTCAGGTTGGACATAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTGCGAATGGGAATGCCAGCAACTCAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTTGCTGATATGCGGCTGTCCCAACACATTGAGAAAGGAAATGAAGATGGTTTGTTCATCAGCAGTGTGGCATCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATCAACTCTCGTCCCACTTTCTTAACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCGTAGCTGGAGCTAATAATGGGTGCTCATTGGTTGTAATGTCTAAAGGGACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTATTATGTCCCGAGGGGCTGGTTTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGCATTCATCGACGATGGGATAGCGGTCACCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTTCCTAGAAGAAAGCCAGCTGATGAAACTCAAGAGACACTCCGCACATCTGCTTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTTTCATAA 2109 0.4642 MPELRTRPRRNRLLDNANTNPITRPHSPAAVGAGRRRRTSAAATQTKRNRRQKNAIAADEIGHIVNNDDAGAVREARARELKDEQGEPVRVLEEEAMDEYDSGGRSADKAPGAEDDGSTAPLPEKVQVGCSPLYRVERKLGKGGFGQVYVGRRAGATTNSSERTGSAAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDILGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGFQGENKGFQVCKKKMATSPEALCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYQLSSHFLNKEWIMEQWEKNYYISAVAGANNGCSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIIMSRGAGFSDQVVELDFLYPSEGIHRRWDSGHRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00022 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gabi2973g00022 702 SUPERFAMILY Protein kinase-like (PK-like) 134 415 IPR011009 -
Gabi2973g00022 702 Pfam Protein kinase domain 134 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00022 702 CDD STKc_CK1 134 411 - -
Gabi2973g00022 702 ProSiteProfiles Protein kinase domain profile. 134 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00022 702 PANTHER CASEIN KINASE-RELATED 131 668 - -
Gabi2973g00022 702 MobiDBLite consensus disorder prediction 79 125 - -
Gabi2973g00022 702 SMART serkin_6 134 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00022 702 MobiDBLite consensus disorder prediction 79 112 - -
Gabi2973g00022 702 Gene3D Transferase(Phosphotransferase) domain 1 107 458 - -
Gabi2973g00022 702 MobiDBLite consensus disorder prediction 1 62 - -
Gabi2973g00022 702 FunFam casein kinase 1-like protein HD16 107 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00022 Gabi-Chr2973 198930 205952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00022 133 411 MAP Kinase Kinase Kinase AT5G50180 23.973 6.58e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi2973g00022 Pkinase 3.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00022 - - gmx:100779382 1250.73