Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00021 ATGCCTGAGCTGCGTACCCGACCTCGCAGAAACCGCCTGTTAGATAACGCTAATACGAATCCGATTACCCGACCTCACTCACCGGCGGCCGTCGGAGCCGGCCGGAGGAGGAGAACCTCCGCCGCTGCTACTCAGACCAAGAGGAATCGGAGGCAGAAGAACGCGATCGCTGCAGATGAAATCGGTCATATTGTGAACAACGACGACGCCGGTGCCGTTCGTGAAGCCAGGGCCAGAGAGTTGAAAGACGAGCAAGGAGAGCCGGTTAGGGTTTTGGAGGAGGAAGCCATGGATGAGTATGATAGTGGTGGCCGCAGCGCCGATAAGGCTCCGGGTGCCGAAGACGATGGCAGCACCGCTCCACTTCCTGAGAAGGTCCAGGTTGGTTGTTCCCCGTTATACAGAGTTGAGAGAAAACTTGGGAAAGGAGGATTTGGACAAGTCTATGTTGGTCGGCGTGCAGGAGCTACTACAAATTCTAGTGAACGAACTGGTTCGGCCGCTATTGAGGTAGCTTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGTCACGGTGTTCCACGAGTTCATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATTCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCGACTGAAATGGTTGCATGTATCGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCACGGTGATGTAAAGCCGGAGAACTTTTTGCTTGGCCCCCCTGGAACTCCTGATGAGAAGAAGTTGTTTCTGGTTGATCTTGGATTAGGTAAATATACCACAGCAACTCGGTGGCGTGATAGTTCAACTGGCCTTCATGTTGACTATGATCAACGCCCAGATGTATTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATTTCAGGGAGAAAATAAAGGATTTCAAGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAGCTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGTCCAAATCCAGACATCAGGCCAATAAACACTGAGGGTGCTCAAAAGCTTATATGTCAGGTTGGACATAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTGCGAATGGGAATGCCAGCAACTCAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTTGCTGATATGCGGCTGTCCCAACACATTGAGAAAGGAAATGAAGATGGTTTGTTCATCAGCAGTGTGGCATCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATCAACTCTCGTCCCACTTTCTTAACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCGTAGCTGGAGCTAATAATGGGTGCTCATTGGTTGTAATGTCTAAAGGGACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTATTATGTCCCGAGGGGCTGGTTTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGCATTCATCGACGATGGGATAGCGGTCACCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTTCCTAGAAGAAAGCCAGCTGATGAAACTCAAGAGACACTCCGCACATCTGCTTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTTTCATAA 2124 0.4633 MPELRTRPRRNRLLDNANTNPITRPHSPAAVGAGRRRRTSAAATQTKRNRRQKNAIAADEIGHIVNNDDAGAVREARARELKDEQGEPVRVLEEEAMDEYDSGGRSADKAPGAEDDGSTAPLPEKVQVGCSPLYRVERKLGKGGFGQVYVGRRAGATTNSSERTGSAAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDILGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLGKYTTATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGFQGENKGFQVCKKKMATSPEALCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYQLSSHFLNKEWIMEQWEKNYYISAVAGANNGCSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIIMSRGAGFSDQVVELDFLYPSEGIHRRWDSGHRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00021 707 PANTHER CASEIN KINASE-RELATED 131 673 - -
Gabi2973g00021 707 Gene3D Transferase(Phosphotransferase) domain 1 107 463 - -
Gabi2973g00021 707 ProSiteProfiles Protein kinase domain profile. 134 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00021 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gabi2973g00021 707 CDD STKc_CK1 134 416 - -
Gabi2973g00021 707 Pfam Protein kinase domain 134 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00021 707 MobiDBLite consensus disorder prediction 79 125 - -
Gabi2973g00021 707 SMART serkin_6 134 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00021 707 FunFam casein kinase 1-like protein HD16 107 463 - -
Gabi2973g00021 707 MobiDBLite consensus disorder prediction 79 112 - -
Gabi2973g00021 707 SUPERFAMILY Protein kinase-like (PK-like) 134 420 IPR011009 -
Gabi2973g00021 707 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00021 Gabi-Chr2973 198930 205952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00021 133 416 MAP Kinase Kinase Kinase AT5G50180 23.906 7.45e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi2973g00021 Pkinase 9.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00021 - - gmx:100779382 1244.57