Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00020 ATGCCTGAGCTGCGTACCCGACCTCGCAGAAACCGCCTGTTAGATAACGCTAATACGAATCCGATTACCCGACCTCACTCACCGGCGGCCGTCGGAGCCGGCCGGAGGAGGAGAACCTCCGCCGCTGCTACTCAGACCAAGAGGAATCGGAGGCAGAAGAACGCGATCGCTGCAGATGAAATCGGTCATATTGTGAACAACGACGACGCCGGTGCCGTTCGTGAAGCCAGGGCCAGAGAGTTGAAAGACGAGCAAGGAGAGCCGGTTAGGGTTTTGGAGGAGGAAGCCATGGATGAGTATGATAGTGGTGGCCGCAGCGCCGATAAGGCTCCGGGTGCCGAAGACGATGGCAGCACCGCTCCACTTCCTGAGAAGGTCCAGGTTGGTTGTTCCCCGTTATACAGAGTTGAGAGAAAACTTGGGAAAGGAGGATTTGGACAAGTCTATGTTGGTCGGCGTGCAGGAGCTACTACAAATTCTAGTGAACGAACTGGTTCGGCCGCTATTGAGGTAGCTTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGTCACGGTGTTCCACGAGTTCATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATTCTTGGCCCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCGACTGAAATGGTTGCATGTATCGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCACGGTGATGTAAAGCCGGAGAACTTTTTGCTTGGCCCCCCTGGAACTCCTGATGAGAAGAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGATAGTTCAACTGGCCTTCATGTTGACTATGATCAACGCCCAGATGTATTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATTTCAGGGAGAAAATAAAGGATTTCAAGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAGCTTTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGTCCAAATCCAGACATCAGGCCAATAAACACTGAGGGTGCTCAAAAGGTTGGACATAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTGCGAATGGGAATGCCAGCAACTCAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTACAATGTTGCTGATATGCGGCTGTCCCAACACATTGAGAAAGGAAATGAAGATGGTTTGTTCATCAGCAGTGTGGCATCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATCAACTCTCGTCCCACTTTCTTAACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCGTAGCTGGAGCTAATAATGGGTGCTCATTGGTTGTAATGTCTAAAGGGACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTATTATGTCCCGAGGGGCTGGTTTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGCATTCATCGACGATGGGATAGCGGTCACCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTTCCTAGAAGAAAGCCAGCTGATGAAACTCAAGAGACACTCCGCACATCTGCTTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTTTCATAA 2097 0.4649 MPELRTRPRRNRLLDNANTNPITRPHSPAAVGAGRRRRTSAAATQTKRNRRQKNAIAADEIGHIVNNDDAGAVREARARELKDEQGEPVRVLEEEAMDEYDSGGRSADKAPGAEDDGSTAPLPEKVQVGCSPLYRVERKLGKGGFGQVYVGRRAGATTNSSERTGSAAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDILGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGFQGENKGFQVCKKKMATSPEALCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYQLSSHFLNKEWIMEQWEKNYYISAVAGANNGCSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIIMSRGAGFSDQVVELDFLYPSEGIHRRWDSGHRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00020 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gabi2973g00020 698 CDD STKc_CK1 134 411 - -
Gabi2973g00020 698 ProSiteProfiles Protein kinase domain profile. 134 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00020 698 MobiDBLite consensus disorder prediction 432 453 - -
Gabi2973g00020 698 Pfam Protein kinase domain 134 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00020 698 SUPERFAMILY Protein kinase-like (PK-like) 134 415 IPR011009 -
Gabi2973g00020 698 SMART serkin_6 134 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2973g00020 698 MobiDBLite consensus disorder prediction 79 125 - -
Gabi2973g00020 698 FunFam casein kinase 1-like protein HD16 107 454 - -
Gabi2973g00020 698 Gene3D Transferase(Phosphotransferase) domain 1 107 461 - -
Gabi2973g00020 698 PANTHER CASEIN KINASE-RELATED 131 664 - -
Gabi2973g00020 698 MobiDBLite consensus disorder prediction 79 112 - -
Gabi2973g00020 698 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00020 Gabi-Chr2973 198930 205953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00020 133 411 MAP Kinase Kinase Kinase AT5G50180 23.973 6.08e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi2973g00020 Pkinase 3.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00020 - - gmx:100779382 1236.48