Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2973g00013 ATGATGGCAGTGAGTTCAGCCTGCAAAGATGGTAGCAAGGTGGCAATGGACAACGGCAAGTACGTGCGTTACACACCTGAGCAGGTGGAAGCACTCGAAAGGCTTTACCATGAATGCCCCAAACCCACTTCCTTACGCCGCCAACAACTCATCAGAGAGTGTCCCATTCTCTCCAATATTGAGCCCAAACAGATCAAGGTTTGGTTCCAAAACAGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGACTGCAAGGTGTGAACAGGAAGCTGACGGCAATGAACAAACTATTGATGGAGGAAAACGACAGATTGCAGAAACAGGTGTCACAGCTGGTGTATGAAAACAGCTTTTTCCGCCAACAGACACAGAATGCGGCGACCCTTGCAACTACAGACACAAGTTGTGAGTCGGTGGTAACGAGCGGTCAGCGCCACTTGACACCGCAGCATCCACCGAGGGATGCAAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGAAAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTAAATGTGATGTCCACTGGAAATGGGGGAACCATTGAACTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCTCCAGGTCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGATGGTAGTCTTGTGGTTTGTGAAAGATCACTTAACAACACTCAGAATGGACCTACTATGCCCCCAGTGCAGCATTTTGTTAGAGCCGACATGCTGCCAAGCGGGTATCTGATTAGACCTTGCGATGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCATGGAGTGTACCTGAAGTTCTACGCCCACTTTATGAGTCATCAATGCTGCTTGCTCAGAGGACCACTATGGCGGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAATTTCTCAGCCAAGTGTCACAGGATGGGGAAGAAGGCCTGCAGCTCTACGTGCGCTTAGTCAGCGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTACAGATGATGGCTGGTCCTTGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAGATGATGGGAATAAATCTTGGCTATAACAATGGATTCCCTTCTGTGAGCAGTTCCGTGCTATGTGCCAAAGCATCCATGTTGTTACAGAATGTCCCTCCGGCAATACTTCTTAGATTCTTGCGGGAACACCGATCAGAATGGGCAGATAGCAGCATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGAATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATTCCTGGTGACGTTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGACGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCCAGCACGGATGCAGCTAGTCCAAACCGCACACTTGATCTTGCTTCTGCACTTGAAGTTGGAACCGCCGCAAACAAGGCAACTGGTGACAATTCAGGTCATTCTGGTAGCGCAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCATCTTCAAGATAATATAGCAACAATGGCCAGACAGTATGTCCGTAGCATTATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGTTTCGGTTCTAACAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGGTGGATCTGTAACAGCCATAGGTTCTATCTAGGGGTAGAGCTACTAAAGTGTGAAAGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCACTCAGATGCAATCTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTATGTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACAACCTTGGTTGCACTTCAAGACATCACCCTGGAAAAAATATTTGATGACAACGGAAAGAAAACCCTGTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATCTGTTTGTCCAGCATGGGGAGGCCAGTGTCCTATGAGAGAGCAGTAGCATGGAAAGTACTAAACAACGAAGAATCGGCTCACTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTTTAA 2523 0.4728 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNAATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKERLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPTMPPVQHFVRADMLPSGYLIRPCDGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEISQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSLLESDGIDDVTLLVNSSPSKMMGINLGYNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARAGGFGGQVILPLAHTIENEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSTDAASPNRTLDLASALEVGTAANKATGDNSGHSGSAKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSNNAFHLPPGTPEAQTLARWICNSHRFYLGVELLKCESSESILKSLWHHSDAILCCSLKALPVFMFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNNEESAHCICFMFINWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2973g00013 840 CDD bZIP 72 111 - -
Gabi2973g00013 840 Gene3D - 199 380 IPR023393 -
Gabi2973g00013 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 840 IPR044830 GO:0003700
Gabi2973g00013 840 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Gabi2973g00013 840 Gene3D - 11 85 - -
Gabi2973g00013 840 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Gabi2973g00013 840 ProSiteProfiles START domain profile. 155 357 IPR002913 GO:0008289
Gabi2973g00013 840 Pfam START domain 165 373 IPR002913 GO:0008289
Gabi2973g00013 840 SMART HOX_1 17 83 IPR001356 GO:0003677
Gabi2973g00013 840 Pfam MEKHLA domain 699 839 IPR013978 -
Gabi2973g00013 840 SUPERFAMILY Bet v1-like 164 375 - -
Gabi2973g00013 840 SMART START_1 164 374 IPR002913 GO:0008289
Gabi2973g00013 840 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Gabi2973g00013 840 Coils Coil 89 116 - -
Gabi2973g00013 840 CDD homeodomain 20 80 IPR001356 GO:0003677
Gabi2973g00013 840 CDD START_ArGLABRA2_like 159 374 - -
Gabi2973g00013 840 Pfam Homeodomain 20 78 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2973g00013 Gabi-Chr2973 121396 128662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2973g00013 16 840 Homeobox Transcription Factor Family AT4G32880 80.072 0.0 1394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2973g00013 START 1.8e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2973g00013 K09338 - gmx:100815727 1608.58